Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRJ21_RS03170 Genome accession   NZ_CP064091
Coordinates   727345..727953 (+) Length   202 a.a.
NCBI ID   WP_029973656.1    Uniprot ID   A0AAP3YAZ1
Organism   Bacillus velezensis strain C1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 722345..732953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS03130 - 723365..723871 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  IRJ21_RS03135 - 724010..724423 (+) 414 WP_029973660.1 hypothetical protein -
  IRJ21_RS03140 - 724453..724920 (-) 468 WP_029973659.1 YppG family protein -
  IRJ21_RS03145 - 725107..725289 (+) 183 WP_003153532.1 YppF family protein -
  IRJ21_RS03150 - 725328..725696 (-) 369 WP_029973658.1 YppE family protein -
  IRJ21_RS03155 - 725742..725987 (-) 246 WP_014418233.1 DUF5446 family protein -
  IRJ21_RS03160 sspM 726193..726297 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  IRJ21_RS03165 - 726341..727303 (-) 963 WP_029973657.1 DUF2515 domain-containing protein -
  IRJ21_RS03170 recU 727345..727953 (+) 609 WP_029973656.1 Holliday junction resolvase RecU Machinery gene
  IRJ21_RS03175 - 727992..730775 (+) 2784 WP_022553045.1 PBP1A family penicillin-binding protein -
  IRJ21_RS03180 - 730853..731344 (-) 492 WP_022553044.1 YpoC family protein -
  IRJ21_RS03185 nth 731341..732000 (-) 660 WP_022553043.1 endonuclease III -
  IRJ21_RS03190 dnaD 732019..732717 (-) 699 WP_017418023.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=499039 IRJ21_RS03170 WP_029973656.1 727345..727953(+) (recU) [Bacillus velezensis strain C1]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=499039 IRJ21_RS03170 WP_029973656.1 727345..727953(+) (recU) [Bacillus velezensis strain C1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896