Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ISP08_RS08830 Genome accession   NZ_CP064056
Coordinates   1818200..1818769 (-) Length   189 a.a.
NCBI ID   WP_195718699.1    Uniprot ID   A0A7T1FAJ3
Organism   Staphylococcus lloydii strain 23_2_7_LY     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813200..1823769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISP08_RS08795 (ISP08_08790) - 1813265..1814623 (-) 1359 WP_195718698.1 isochorismate synthase -
  ISP08_RS08800 (ISP08_08795) - 1814808..1815746 (+) 939 WP_048793688.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ISP08_RS08805 (ISP08_08800) - 1815781..1816353 (-) 573 WP_048793687.1 GNAT family N-acetyltransferase -
  ISP08_RS08810 (ISP08_08805) - 1816528..1816737 (+) 210 WP_195718377.1 TM2 domain-containing protein -
  ISP08_RS12940 - 1816827..1816958 (+) 132 WP_267904779.1 hypothetical protein -
  ISP08_RS08815 (ISP08_08810) - 1817027..1817395 (-) 369 WP_195718378.1 nuclear transport factor 2 family protein -
  ISP08_RS08830 (ISP08_08825) comK/comK1 1818200..1818769 (-) 570 WP_195718699.1 competence protein ComK Regulator
  ISP08_RS08835 (ISP08_08830) - 1819008..1819226 (+) 219 WP_048792741.1 IDEAL domain-containing protein -
  ISP08_RS08840 (ISP08_08835) - 1819306..1820295 (-) 990 WP_048792740.1 lipoate--protein ligase -
  ISP08_RS08845 (ISP08_08840) - 1820494..1820679 (+) 186 WP_048792739.1 DUF2187 family protein -
  ISP08_RS08850 (ISP08_08845) - 1820685..1821287 (+) 603 WP_048792738.1 CPBP family glutamic-type intramembrane protease -
  ISP08_RS08855 (ISP08_08850) - 1821356..1822222 (-) 867 WP_195718379.1 YitT family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22619.01 Da        Isoelectric Point: 9.7293

>NTDB_id=498851 ISP08_RS08830 WP_195718699.1 1818200..1818769(-) (comK/comK1) [Staphylococcus lloydii strain 23_2_7_LY]
MEIINKYVIKKGDMVVQPFDTKERKYGGTRVLKYKQPTEELKERAHKIIERSCRFYGSSYHFKKEDTIRITGIISKSPIL
FTPLFPTYFFPTHSDRKDENTWINIHYVQSIKSLKDRKSKVTFVDNQFITIEISGHSMRHQYLNAIYYYYMMDREARITT
FDPDAPIDYTKPQLNIYEALAKYSLFEHK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=498851 ISP08_RS08830 WP_195718699.1 1818200..1818769(-) (comK/comK1) [Staphylococcus lloydii strain 23_2_7_LY]
ATTGAGATAATTAATAAATATGTTATAAAGAAAGGAGACATGGTAGTTCAACCGTTTGATACAAAAGAAAGAAAATATGG
TGGCACAAGGGTATTAAAATATAAACAACCAACAGAAGAATTAAAAGAAAGAGCGCACAAAATAATTGAACGTTCATGCC
GATTTTACGGTAGTAGTTATCATTTTAAGAAAGAGGACACCATACGCATCACAGGAATTATCAGTAAATCCCCGATATTA
TTCACTCCGTTATTTCCCACATACTTTTTCCCAACACACTCTGATAGAAAAGACGAAAATACATGGATTAATATTCATTA
TGTACAAAGTATCAAATCACTAAAAGATAGAAAGAGTAAGGTAACATTTGTTGATAACCAATTTATAACTATTGAAATTT
CTGGTCATAGTATGAGACATCAATATTTAAACGCGATTTACTATTATTATATGATGGATAGAGAAGCAAGAATAACTACA
TTTGATCCAGATGCACCTATAGATTATACTAAACCGCAATTAAATATTTATGAAGCATTAGCCAAGTATTCATTGTTTGA
ACATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1FAJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.376

98.413

0.545
  comK/comK1 Staphylococcus aureus N315

55.376

98.413

0.545