Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   KHS93_RS07540 Genome accession   NZ_CP075547
Coordinates   1494311..1495333 (+) Length   340 a.a.
NCBI ID   WP_032856763.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489311..1500333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS07500 (KHS93_07500) - 1489670..1489909 (+) 240 WP_003154475.1 YlbE-like family protein -
  KHS93_RS07505 (KHS93_07505) ylbF 1489980..1490429 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  KHS93_RS07510 (KHS93_07510) - 1490488..1490760 (+) 273 WP_003154470.1 YlbG family protein -
  KHS93_RS07515 (KHS93_07515) - 1490851..1491060 (+) 210 WP_015388275.1 hypothetical protein -
  KHS93_RS07520 (KHS93_07520) rsmD 1491060..1491614 (+) 555 WP_032856757.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KHS93_RS07525 (KHS93_07525) coaD 1491619..1492101 (+) 483 WP_032856759.1 pantetheine-phosphate adenylyltransferase -
  KHS93_RS07530 (KHS93_07530) ylbJ 1492120..1493346 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  KHS93_RS07535 (KHS93_07535) - 1493526..1494305 (+) 780 WP_032856761.1 patatin family protein -
  KHS93_RS07540 (KHS93_07540) sepM 1494311..1495333 (+) 1023 WP_032856763.1 SepM family pheromone-processing serine protease Regulator
  KHS93_RS07545 (KHS93_07545) - 1495352..1496599 (-) 1248 WP_048367230.1 nucleotidyltransferase -
  KHS93_RS07550 (KHS93_07550) - 1496808..1497326 (+) 519 WP_003154459.1 DUF177 domain-containing protein -
  KHS93_RS07555 (KHS93_07555) rpmF 1497348..1497527 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  KHS93_RS07560 (KHS93_07560) gerR 1497687..1498262 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  KHS93_RS07565 (KHS93_07565) - 1498303..1498785 (-) 483 WP_015388272.1 N-acetyltransferase -
  KHS93_RS07570 (KHS93_07570) - 1498948..1499829 (+) 882 WP_032856768.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37417.00 Da        Isoelectric Point: 7.3848

>NTDB_id=498801 KHS93_RS07540 WP_032856763.1 1494311..1495333(+) (sepM) [Bacillus amyloliquefaciens strain SN16-1]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKVVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=498801 KHS93_RS07540 WP_032856763.1 1494311..1495333(+) (sepM) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTCCACATTGAACGGGACACGAAAGA
AAAGGTCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(100-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-330)

PDZ domain (PDZ_2)

(128-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.372

100

0.388