Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KHS93_RS07505 Genome accession   NZ_CP075547
Coordinates   1489980..1490429 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1484980..1495429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS07465 (KHS93_07465) ctaE 1485110..1485733 (+) 624 WP_069473401.1 cytochrome c oxidase subunit III -
  KHS93_RS07470 (KHS93_07470) ctaF 1485736..1486068 (+) 333 WP_025851402.1 cytochrome c oxidase subunit IVB -
  KHS93_RS07475 (KHS93_07475) ctaG 1486093..1486977 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  KHS93_RS07480 (KHS93_07480) - 1487011..1487370 (-) 360 WP_003154479.1 YugN family protein -
  KHS93_RS07485 (KHS93_07485) - 1487511..1487954 (+) 444 WP_003154478.1 CBS domain-containing protein -
  KHS93_RS07490 (KHS93_07490) - 1488039..1489079 (+) 1041 WP_057080691.1 CAP domain-containing protein -
  KHS93_RS07495 (KHS93_07495) - 1489244..1489654 (+) 411 WP_014304959.1 YlbD family protein -
  KHS93_RS07500 (KHS93_07500) - 1489670..1489909 (+) 240 WP_003154475.1 YlbE-like family protein -
  KHS93_RS07505 (KHS93_07505) ylbF 1489980..1490429 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  KHS93_RS07510 (KHS93_07510) - 1490488..1490760 (+) 273 WP_003154470.1 YlbG family protein -
  KHS93_RS07515 (KHS93_07515) - 1490851..1491060 (+) 210 WP_015388275.1 hypothetical protein -
  KHS93_RS07520 (KHS93_07520) rsmD 1491060..1491614 (+) 555 WP_032856757.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KHS93_RS07525 (KHS93_07525) coaD 1491619..1492101 (+) 483 WP_032856759.1 pantetheine-phosphate adenylyltransferase -
  KHS93_RS07530 (KHS93_07530) ylbJ 1492120..1493346 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  KHS93_RS07535 (KHS93_07535) - 1493526..1494305 (+) 780 WP_032856761.1 patatin family protein -
  KHS93_RS07540 (KHS93_07540) sepM 1494311..1495333 (+) 1023 WP_032856763.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=498800 KHS93_RS07505 WP_003154472.1 1489980..1490429(+) (ylbF) [Bacillus amyloliquefaciens strain SN16-1]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=498800 KHS93_RS07505 WP_003154472.1 1489980..1490429(+) (ylbF) [Bacillus amyloliquefaciens strain SN16-1]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGATTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879