Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KIK01_RS05855 Genome accession   NZ_CP075489
Coordinates   1155916..1157694 (-) Length   592 a.a.
NCBI ID   WP_016265206.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain ob4.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150916..1162694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK01_RS05840 (KIK01_05840) - 1153191..1154030 (-) 840 WP_016265202.1 YitT family protein -
  KIK01_RS05845 (KIK01_05845) - 1154161..1155189 (-) 1029 WP_016265203.1 aldehyde reductase -
  KIK01_RS05850 (KIK01_05850) - 1155302..1155871 (+) 570 WP_094365739.1 TetR/AcrR family transcriptional regulator -
  KIK01_RS05855 (KIK01_05855) uvrC 1155916..1157694 (-) 1779 WP_016265206.1 excinuclease ABC subunit UvrC Machinery gene
  KIK01_RS05860 (KIK01_05860) - 1157774..1158505 (-) 732 WP_016265207.1 amino acid ABC transporter ATP-binding protein -
  KIK01_RS05865 (KIK01_05865) - 1158498..1159961 (-) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  KIK01_RS05870 (KIK01_05870) - 1160096..1160248 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  KIK01_RS05875 (KIK01_05875) - 1160323..1160616 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  KIK01_RS05880 (KIK01_05880) yihA 1160616..1161215 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  KIK01_RS05885 (KIK01_05885) clpX 1161362..1162615 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67778.35 Da        Isoelectric Point: 9.6587

>NTDB_id=498707 KIK01_RS05855 WP_016265206.1 1155916..1157694(-) (uvrC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=498707 KIK01_RS05855 WP_016265206.1 1155916..1157694(-) (uvrC) [Latilactobacillus sakei subsp. sakei strain ob4.1]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCATATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTACGGCGCTGTCAGGGCCATCAAGGCCGCCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGTGCTTGTTTCCAGGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAACGGGCAAGTTGACAATGTTAAGAAGGATTTAACAGAGAAAATGGCGACGGCCGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGCCTCTTTCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AATGGTATAACCGTAAGAATAATGTGTTACCACGAGAAATTCTCGTGCCAGATGGCATCGAAAAACAAGTCTTATCCGAT
ATTTTGCAAGTACCGATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGTTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAATTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCATCGTCAGTTGC
GTGGTAAGAATTCGTTGAGTTCTAAGTTGGATGATATCAAGGGCGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATCTCGAAGACAGTTGCGCAAAC
CATTAAATTATCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

Helix-hairpin-helix domain (HHH_5)

(542-592)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5