Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   H9J98_RS04645 Genome accession   NZ_CP064041
Coordinates   983434..984615 (-) Length   393 a.a.
NCBI ID   WP_031854862.1    Uniprot ID   A0A9Q3UI02
Organism   Vibrio parahaemolyticus strain XMO116     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 978434..989615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS04630 (H9J98_04620) - 979737..980285 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  H9J98_RS04635 (H9J98_04625) - 980372..980989 (-) 618 WP_005498603.1 HAD family phosphatase -
  H9J98_RS04640 (H9J98_04630) cqsS 981309..983357 (+) 2049 WP_069487829.1 hybrid sensor histidine kinase/response regulator Regulator
  H9J98_RS04645 (H9J98_04635) cqsA 983434..984615 (-) 1182 WP_031854862.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H9J98_RS04650 (H9J98_04640) ylqF 984972..985916 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  H9J98_RS04655 (H9J98_04645) - 986634..987488 (-) 855 WP_045608181.1 LysR family transcriptional regulator -
  H9J98_RS04660 (H9J98_04650) - 987576..988469 (-) 894 Protein_839 IS3 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43782.10 Da        Isoelectric Point: 6.6123

>NTDB_id=498651 H9J98_RS04645 WP_031854862.1 983434..984615(-) (cqsA) [Vibrio parahaemolyticus strain XMO116]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERGVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=498651 H9J98_RS04645 WP_031854862.1 983434..984615(-) (cqsA) [Vibrio parahaemolyticus strain XMO116]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAATGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCATCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCCCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTCCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGGCGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAATTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578