Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   H9J98_RS04640 Genome accession   NZ_CP064041
Coordinates   981309..983357 (+) Length   682 a.a.
NCBI ID   WP_069487829.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain XMO116     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 976309..988357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS04615 (H9J98_04605) - 976570..977094 (+) 525 Protein_830 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  H9J98_RS04620 (H9J98_04610) - 977203..978411 (+) 1209 WP_001352368.1 IS4-like element ISVsa5 family transposase -
  H9J98_RS04625 (H9J98_04615) - 978380..979465 (-) 1086 WP_248339859.1 fatty acid desaturase -
  H9J98_RS04630 (H9J98_04620) - 979737..980285 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  H9J98_RS04635 (H9J98_04625) - 980372..980989 (-) 618 WP_005498603.1 HAD family phosphatase -
  H9J98_RS04640 (H9J98_04630) cqsS 981309..983357 (+) 2049 WP_069487829.1 hybrid sensor histidine kinase/response regulator Regulator
  H9J98_RS04645 (H9J98_04635) cqsA 983434..984615 (-) 1182 WP_031854862.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  H9J98_RS04650 (H9J98_04640) ylqF 984972..985916 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  H9J98_RS04655 (H9J98_04645) - 986634..987488 (-) 855 WP_045608181.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78347.20 Da        Isoelectric Point: 5.8750

>NTDB_id=498650 H9J98_RS04640 WP_069487829.1 981309..983357(+) (cqsS) [Vibrio parahaemolyticus strain XMO116]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDTRSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQL
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMVDISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYASVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=498650 H9J98_RS04640 WP_069487829.1 981309..983357(+) (cqsS) [Vibrio parahaemolyticus strain XMO116]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTGCTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTCATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGCTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATACAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGTAGCTCAGACGAGTTTCATATTCATGTGAGTATGCAAAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATTGCACCAGATGTGATTCGACATATTTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGTCTTGGACTACCGTTCTGCAAGAAAGTCATGCGTTCGTTTGGTGGTAATATTAAGTGTATTTCCCAGCTG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACAGAAATTAAAGATGAGCTGACCAA
AATGAAATCGATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGTAGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAACACAAACCTGCACAACGAGCTAAAAAAGCTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACCAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACGCTGCCATCTGCGCCTTTAGATAAA
TCCATCAAGCGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCGTCTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATAGGCTCGTCCGGCATGTCCGACTTTATCGTTAA
ACCCGCTGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.83

100

0.49