Detailed information NTG0498640

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H9J98_RS02955
• Genome accession: NZ_CP064041
• Coordinates: 617144..618133 (+)
• Length: 329 a.a.
• NCBI ID: WP_025632114.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain XMO116
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 612144..623133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9J98_RS02920 (H9J98_02915)	ftsB	612152..612433 (+)	282	WP_005455577.1	cell division protein FtsB	-
H9J98_RS02925 (H9J98_02920)	ispD	612435..613139 (+)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H9J98_RS02930 (H9J98_02925)	ispF	613157..613633 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H9J98_RS02935 (H9J98_02930)	truD	613680..614723 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
H9J98_RS02940 (H9J98_02935)	surE	614723..615499 (+)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
H9J98_RS02945 (H9J98_02940)	-	615499..616125 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H9J98_RS02950 (H9J98_02945)	-	616140..617063 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
H9J98_RS02955 (H9J98_02950)	rpoS	617144..618133 (+)	990	WP_025632114.1	RNA polymerase sigma factor RpoS	Regulator
H9J98_RS02960 (H9J98_02955)	mutS	618213..620774 (-)	2562	WP_025535213.1	DNA mismatch repair protein MutS	-
H9J98_RS02965 (H9J98_02960)	pncC	620859..621341 (+)	483	WP_222133728.1	nicotinamide-nucleotide amidase	-
H9J98_RS02970 (H9J98_02965)	recA	621542..622585 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37488.32 Da
• Isoelectric Point: 4.6433

>NTDB_id=498640 H9J98_RS02955 WP_025632114.1 617144..618133(+) (rpoS) [Vibrio parahaemolyticus strain XMO116]
MSISNTVSKVEEFEYDNASETTIDNELGKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=498640 H9J98_RS02955 WP_025632114.1 617144..618133(+) (rpoS) [Vibrio parahaemolyticus strain XMO116]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGGAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGCGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATCTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACGGCAGAAGAAATTGCTGCTCAACTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTACTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.68	100	0.857