Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H9J98_RS02970 Genome accession   NZ_CP064041
Coordinates   621542..622585 (+) Length   347 a.a.
NCBI ID   WP_005478550.1    Uniprot ID   Q87LR1
Organism   Vibrio parahaemolyticus strain XMO116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 616542..627585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS02955 (H9J98_02950) rpoS 617144..618133 (+) 990 WP_025632114.1 RNA polymerase sigma factor RpoS Regulator
  H9J98_RS02960 (H9J98_02955) mutS 618213..620774 (-) 2562 WP_025535213.1 DNA mismatch repair protein MutS -
  H9J98_RS02965 (H9J98_02960) pncC 620859..621341 (+) 483 WP_222133728.1 nicotinamide-nucleotide amidase -
  H9J98_RS02970 (H9J98_02965) recA 621542..622585 (+) 1044 WP_005478550.1 recombinase RecA Machinery gene
  H9J98_RS02975 (H9J98_02970) recX 622709..623176 (+) 468 WP_005455548.1 recombination regulator RecX -
  H9J98_RS02980 (H9J98_02975) alaS 623319..625901 (+) 2583 WP_065769723.1 alanine--tRNA ligase -
  H9J98_RS02985 (H9J98_02980) - 626104..627291 (+) 1188 WP_020841266.1 aspartate kinase -
  H9J98_RS02990 (H9J98_02985) csrA 627384..627581 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37432.91 Da        Isoelectric Point: 5.1850

>NTDB_id=498642 H9J98_RS02970 WP_005478550.1 621542..622585(+) (recA) [Vibrio parahaemolyticus strain XMO116]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPAAGEKPEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=498642 H9J98_RS02970 WP_005478550.1 621542..622585(+) (recA) [Vibrio parahaemolyticus strain XMO116]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGACATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATTGTTGAGATTTACGGTCCAGAATCTTCAGGTAAGACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCATGCTCTAGATCCTGTATATGCAAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCAATCGACGTAATGGTTGTTGACTCTGTTGCTGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCCGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAGACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTGCTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.643

100

0.916
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.643

100

0.916
  recA Pseudomonas stutzeri DSM 10701

72.941

97.983

0.715
  recA Acinetobacter baylyi ADP1

72.303

98.847

0.715
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

65.903

100

0.663
  recA Neisseria gonorrhoeae MS11

65.903

100

0.663
  recA Neisseria gonorrhoeae strain FA1090

65.903

100

0.663
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.625

0.64
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Helicobacter pylori strain NCTC11637

62.08

94.236

0.585
  recA Streptococcus pneumoniae Rx1

62.848

93.084

0.585
  recA Streptococcus pneumoniae R6

62.848

93.084

0.585
  recA Streptococcus pneumoniae D39

62.848

93.084

0.585
  recA Streptococcus pneumoniae TIGR4

62.848

93.084

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus pyogenes NZ131

61.231

93.66

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.681

93.084

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

92.507

0.562