NTDB

Overview

Name	luxP	Type	Regulator
Locus tag	H9K44_RS23285	Genome accession	NZ_CP064036
Coordinates	1725594..1726691 (-)	Length	365 a.a.
NCBI ID	WP_005463467.1	Uniprot ID	Q87GU4
Organism	Vibrio parahaemolyticus strain DLM1799
Function	autoinducer sensor (predicted from homology) Competence regulation

Genomic Context

Location: 1720594..1731691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K44_RS23270 (H9K44_23225)	-	1721258..1722313 (-)	1056	WP_025623626.1	HlyD family secretion protein	-
H9K44_RS23275 (H9K44_23230)	-	1722351..1722806 (-)	456	WP_025525184.1	MarR family transcriptional regulator	-
H9K44_RS23280 (H9K44_23235)	luxQ	1723018..1725594 (-)	2577	WP_169609011.1	quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ	-
H9K44_RS23285 (H9K44_23240)	luxP	1725594..1726691 (-)	1098	WP_005463467.1	autoinducer 2-binding periplasmic protein LuxP	Regulator
H9K44_RS23290 (H9K44_23245)	-	1727043..1727363 (-)	321	WP_005463466.1	GIY-YIG nuclease family protein	-
H9K44_RS23295 (H9K44_23250)	-	1727360..1728010 (-)	651	WP_169609013.1	YceH family protein	-
H9K44_RS23300 (H9K44_23255)	-	1728187..1728402 (-)	216	WP_005477197.1	hypothetical protein	-
H9K44_RS23305 (H9K44_23260)	-	1728729..1729043 (+)	315	WP_005453573.1	DUF496 family protein	-
H9K44_RS23310 (H9K44_23265)	-	1729166..1730503 (+)	1338	WP_169609198.1	MATE family efflux transporter	-
H9K44_RS23315 (H9K44_23270)	-	1730577..1731554 (-)	978	WP_015313433.1	Gfo/Idh/MocA family oxidoreductase	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41339.67 Da Isoelectric Point: 5.0568

                                >NTDB_id=498627 H9K44_RS23285 WP_005463467.1 1725594..1726691(-) (luxP) [Vibrio parahaemolyticus strain DLM1799]

MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD

YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI

TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT

KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA

EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=498627 H9K44_RS23285 WP_005463467.1 1725594..1726691(-) (luxP) [Vibrio parahaemolyticus strain DLM1799]

ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG

CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG

ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT

TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC

GCGACCTAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGTAATTCCGACTACTTAATTTTTA

CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC

ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCATTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT

CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA

TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA

AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA

TGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATCAATGGCTGGGGCGGTGGTTCTG

CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA

GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA

TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
luxP	Vibrio cholerae strain A1552	64.56	99.726	0.644

Detailed information NTG0498627