Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   H9K44_RS10310 Genome accession   NZ_CP064035
Coordinates   2215038..2216441 (-) Length   467 a.a.
NCBI ID   WP_248385784.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2210038..2221441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS10275 (H9K44_10265) moaE 2210610..2211065 (-) 456 WP_015297054.1 molybdopterin synthase catalytic subunit MoaE -
  H9K44_RS10280 (H9K44_10270) moaD 2211067..2211324 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  H9K44_RS10285 (H9K44_10275) moaC 2211321..2211800 (-) 480 WP_023623257.1 cyclic pyranopterin monophosphate synthase MoaC -
  H9K44_RS10290 (H9K44_10280) moaB 2211827..2212339 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  H9K44_RS10295 (H9K44_10285) moaA 2212442..2213431 (-) 990 WP_023623258.1 GTP 3',8-cyclase MoaA -
  H9K44_RS10300 (H9K44_10290) - 2213727..2214620 (+) 894 WP_005494500.1 YvcK family protein -
  H9K44_RS10305 (H9K44_10295) luxU 2214697..2215035 (-) 339 WP_023623259.1 quorum-sensing phosphorelay protein LuxU -
  H9K44_RS10310 (H9K44_10300) luxO 2215038..2216441 (-) 1404 WP_248385784.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  H9K44_RS10315 (H9K44_10305) uvrB 2216730..2218760 (-) 2031 WP_005482400.1 excinuclease ABC subunit UvrB -
  H9K44_RS10325 (H9K44_10315) rsxA 2219750..2220328 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  H9K44_RS10330 (H9K44_10320) rsxB 2220332..2220928 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52203.74 Da        Isoelectric Point: 6.2547

>NTDB_id=498614 H9K44_RS10310 WP_248385784.1 2215038..2216441(-) (luxO) [Vibrio parahaemolyticus strain DLM1799]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIETCDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=498614 H9K44_RS10310 WP_248385784.1 2215038..2216441(-) (luxO) [Vibrio parahaemolyticus strain DLM1799]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACAGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGACGTTTCCGCGAAGACTTATACTACCGGTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAATGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGACGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

95.931

0.837
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368