Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ISN35_RS00405 Genome accession   NZ_CP064000
Coordinates   93689..95077 (+) Length   462 a.a.
NCBI ID   WP_058362147.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain XtKm12     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 85486..95897 93689..95077 within 0


Gene organization within MGE regions


Location: 85486..95897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN35_RS00380 (ISN35_00380) - 85486..87750 (+) 2265 WP_144053144.1 hypothetical protein -
  ISN35_RS19625 - 87863..88168 (-) 306 WP_003466368.1 PQQ-binding-like beta-propeller repeat protein -
  ISN35_RS19630 - 88117..89415 (-) 1299 WP_230938758.1 hypothetical protein -
  ISN35_RS00390 (ISN35_00390) sucD 89701..90573 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  ISN35_RS00395 (ISN35_00395) sucC 90597..91760 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  ISN35_RS00400 (ISN35_00400) - 92001..93614 (+) 1614 WP_058361135.1 ATP-binding protein -
  ISN35_RS00405 (ISN35_00405) pilR 93689..95077 (+) 1389 WP_058362147.1 sigma-54 dependent transcriptional regulator Regulator
  ISN35_RS00410 (ISN35_00410) - 95266..95448 (+) 183 WP_068873434.1 YhfG family protein -
  ISN35_RS00415 (ISN35_00415) - 95445..95897 (+) 453 WP_230812364.1 Fic family protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49878.36 Da        Isoelectric Point: 6.7309

>NTDB_id=498421 ISN35_RS00405 WP_058362147.1 93689..95077(+) (pilR) [Xanthomonas translucens pv. undulosa strain XtKm12]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=498421 ISN35_RS00405 WP_058362147.1 93689..95077(+) (pilR) [Xanthomonas translucens pv. undulosa strain XtKm12]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTACCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.092

99.351

0.617
  pilR Acinetobacter baumannii strain A118

46.983

100

0.472