Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IGI33_RS05990 Genome accession   NZ_CP075477
Coordinates   1224869..1225606 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NT1W25     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1219869..1230606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI33_RS05960 yfiL 1220027..1220392 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IGI33_RS05965 aroF 1220602..1221672 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IGI33_RS05970 tyrA 1221683..1222804 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IGI33_RS05975 pheA 1222847..1224007 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  IGI33_RS05980 pheL 1224106..1224153 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IGI33_RS05985 raiA 1224257..1224598 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IGI33_RS05990 comL 1224869..1225606 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IGI33_RS05995 rluD 1225741..1226721 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGI33_RS06000 yfiH 1226718..1227449 (+) 732 WP_023486560.1 purine nucleoside phosphorylase YfiH -
  IGI33_RS06005 clpC 1227579..1230152 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=498367 IGI33_RS05990 WP_000197686.1 1224869..1225606(-) (comL) [Escherichia coli strain NT1W25]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=498367 IGI33_RS05990 WP_000197686.1 1224869..1225606(-) (comL) [Escherichia coli strain NT1W25]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376