Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SSUA7_RS03995 Genome accession   NC_017622
Coordinates   818359..819585 (+) Length   408 a.a.
NCBI ID   WP_002943186.1    Uniprot ID   A0A116M5Y1
Organism   Streptococcus suis A7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 813359..824585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUA7_RS03960 (SSUA7_0770) - 814498..814833 (+) 336 WP_002934966.1 hypothetical protein -
  SSUA7_RS03965 (SSUA7_0771) - 814929..815888 (+) 960 WP_012775086.1 ROK family glucokinase -
  SSUA7_RS03970 (SSUA7_0772) - 816014..816292 (+) 279 WP_014638911.1 hypothetical protein -
  SSUA7_RS03975 (SSUA7_0773) - 816304..816606 (+) 303 WP_014638912.1 hypothetical protein -
  SSUA7_RS03980 (SSUA7_0774) - 816659..817498 (+) 840 WP_002934970.1 thymidylate synthase -
  SSUA7_RS03985 (SSUA7_0775) - 817649..818161 (+) 513 WP_014638913.1 dihydrofolate reductase -
  SSUA7_RS10545 (SSUA7_0776) - 818164..818337 (+) 174 WP_014638914.1 hypothetical protein -
  SSUA7_RS03995 (SSUA7_0777) clpX 818359..819585 (+) 1227 WP_002943186.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SSUA7_RS04000 (SSUA7_0778) yihA 819640..820227 (+) 588 WP_014638915.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SSUA7_RS04005 (SSUA7_0779) ndk 820250..820663 (+) 414 WP_014638916.1 nucleoside-diphosphate kinase -
  SSUA7_RS04010 (SSUA7_0780) lepA 820759..822591 (+) 1833 WP_014638917.1 translation elongation factor 4 -
  SSUA7_RS04015 (SSUA7_0781) - 822641..822823 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  SSUA7_RS04025 (SSUA7_0783) - 823269..823850 (+) 582 WP_014638919.1 thymidine kinase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45352.85 Da        Isoelectric Point: 4.6382

>NTDB_id=49833 SSUA7_RS03995 WP_002943186.1 818359..819585(+) (clpX) [Streptococcus suis A7]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=49833 SSUA7_RS03995 WP_002943186.1 818359..819585(+) (clpX) [Streptococcus suis A7]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
TGGAAACAATGTGTTTATCTGTAATGAATGTGTGGAATTAGCTCAGGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAT
TGACTGACCTGGCTGACACTCCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAGCGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGCATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCAGATGCGACAGCACTAACTGAGGCTGGTTACGTTGGTGAAGACGTGGAAAATATCCTT
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAGGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGTTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGTTCCATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGTGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116M5Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.13

100

0.833
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574

Multiple sequence alignment