Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IGI29_RS09740 Genome accession   NZ_CP075474
Coordinates   1893816..1894472 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain NT1N28     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888816..1899472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS09710 dcyD 1889695..1890681 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  IGI29_RS09715 tcyL 1890696..1891364 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IGI29_RS09720 tcyN 1891361..1892113 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IGI29_RS09725 sdiA 1892343..1893065 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  IGI29_RS09730 yecF 1893133..1893357 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IGI29_RS09735 yecU 1893344..1893520 (-) 177 WP_000590344.1 protein YecU -
  IGI29_RS23850 - 1893558..1893674 (-) 117 Protein_1768 transcriptional regulator -
  IGI29_RS09740 letA 1893816..1894472 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IGI29_RS09745 uvrC 1894469..1896301 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IGI29_RS09750 pgsA 1896358..1896906 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IGI29_RS09770 yecA 1897556..1898221 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=498301 IGI29_RS09740 WP_000611336.1 1893816..1894472(+) (letA) [Escherichia coli strain NT1N28]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=498301 IGI29_RS09740 WP_000611336.1 1893816..1894472(+) (letA) [Escherichia coli strain NT1N28]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486