Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IGI24_RS06200 Genome accession   NZ_CP075472
Coordinates   1135526..1136263 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NT1F25     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130526..1141263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI24_RS06170 yfiL 1130684..1131049 (-) 366 WP_089570590.1 DUF2799 domain-containing protein -
  IGI24_RS06175 aroF 1131259..1132329 (+) 1071 WP_032298633.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IGI24_RS06180 tyrA 1132340..1133461 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IGI24_RS06185 pheA 1133504..1134664 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IGI24_RS06190 pheL 1134763..1134810 (-) 48 WP_010723158.1 phe operon leader peptide -
  IGI24_RS06195 raiA 1134914..1135255 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IGI24_RS06200 comL 1135526..1136263 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IGI24_RS06205 rluD 1136398..1137378 (+) 981 WP_032298632.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGI24_RS06210 yfiH 1137375..1138106 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IGI24_RS06215 clpC 1138236..1140809 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=498208 IGI24_RS06200 WP_000197686.1 1135526..1136263(-) (comL) [Escherichia coli strain NT1F25]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=498208 IGI24_RS06200 WP_000197686.1 1135526..1136263(-) (comL) [Escherichia coli strain NT1F25]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376