Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IGI31_RS05490 Genome accession   NZ_CP075465
Coordinates   1130090..1130827 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain NT1N34     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1125090..1135827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI31_RS05460 yfiL 1125254..1125613 (-) 360 WP_057688311.1 DUF2799 domain-containing protein -
  IGI31_RS05465 aroF 1125823..1126893 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IGI31_RS05470 tyrA 1126904..1128025 (+) 1122 WP_053295257.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IGI31_RS05475 pheA 1128068..1129228 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IGI31_RS05480 pheL 1129327..1129374 (-) 48 WP_010723158.1 phe operon leader peptide -
  IGI31_RS05485 raiA 1129478..1129819 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IGI31_RS05490 comL 1130090..1130827 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IGI31_RS05495 rluD 1130962..1131942 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IGI31_RS05500 yfiH 1131939..1132670 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IGI31_RS05505 clpC 1132800..1135373 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=498049 IGI31_RS05490 WP_000197686.1 1130090..1130827(-) (comL) [Escherichia coli strain NT1N34]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=498049 IGI31_RS05490 WP_000197686.1 1130090..1130827(-) (comL) [Escherichia coli strain NT1N34]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376