Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KIB02_RS10285 Genome accession   NZ_CP075374
Coordinates   2093528..2094184 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain no107     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088528..2099184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIB02_RS10255 (KIB02_10260) dcyD 2089408..2090394 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  KIB02_RS10260 (KIB02_10265) tcyL 2090409..2091077 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KIB02_RS10265 (KIB02_10270) tcyN 2091074..2091826 (+) 753 WP_001272986.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KIB02_RS10270 (KIB02_10275) sdiA 2092056..2092778 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  KIB02_RS10275 (KIB02_10280) yecF 2092845..2093069 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KIB02_RS10280 (KIB02_10285) yecU 2093056..2093232 (-) 177 WP_000590347.1 protein YecU -
  KIB02_RS27130 - 2093315..2093386 (-) 72 Protein_2019 transcriptional regulator -
  KIB02_RS10285 (KIB02_10290) letA 2093528..2094184 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KIB02_RS10290 (KIB02_10295) uvrC 2094181..2096013 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  KIB02_RS10295 (KIB02_10300) pgsA 2096070..2096618 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KIB02_RS10315 (KIB02_10320) yecA 2097267..2097932 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=497904 KIB02_RS10285 WP_000611335.1 2093528..2094184(+) (letA) [Escherichia coli strain no107]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=497904 KIB02_RS10285 WP_000611335.1 2093528..2094184(+) (letA) [Escherichia coli strain no107]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTTGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486