Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIB02_RS06180 Genome accession   NZ_CP075374
Coordinates   1265227..1265964 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain no107     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1260227..1270964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIB02_RS06145 (KIB02_06145) - 1261090..1262223 (+) 1134 WP_213833183.1 phage late control D family protein -
  KIB02_RS06150 (KIB02_06150) - 1262276..1262533 (+) 258 WP_213833184.1 ogr/Delta-like zinc finger family protein -
  KIB02_RS06155 (KIB02_06155) - 1262751..1262891 (+) 141 WP_000078916.1 Hok/Gef family protein -
  KIB02_RS06160 (KIB02_06160) - 1263027..1263323 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  KIB02_RS06165 (KIB02_06165) - 1263516..1263713 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  KIB02_RS06170 (KIB02_06170) - 1263658..1264464 (+) 807 WP_213833185.1 site-specific DNA-methyltransferase -
  KIB02_RS06175 (KIB02_06175) raiA 1264615..1264956 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIB02_RS06180 (KIB02_06180) comL 1265227..1265964 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIB02_RS06185 (KIB02_06185) rluD 1266099..1267079 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIB02_RS06190 (KIB02_06190) yfiH 1267076..1267807 (+) 732 WP_001402419.1 purine nucleoside phosphorylase YfiH -
  KIB02_RS06195 (KIB02_06195) clpC 1267937..1270510 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=497892 KIB02_RS06180 WP_000197686.1 1265227..1265964(-) (comL) [Escherichia coli strain no107]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=497892 KIB02_RS06180 WP_000197686.1 1265227..1265964(-) (comL) [Escherichia coli strain no107]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376