Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SSUD12_RS03120 Genome accession   NC_017621
Coordinates   605838..606641 (+) Length   267 a.a.
NCBI ID   WP_014637679.1    Uniprot ID   G7SGQ3
Organism   Streptococcus suis D12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 600838..611641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS03095 (SSUD12_0592) - 601267..601965 (-) 699 WP_014637677.1 amino acid ABC transporter permease -
  SSUD12_RS03100 (SSUD12_0593) - 601980..602819 (-) 840 WP_014637678.1 transporter substrate-binding domain-containing protein -
  SSUD12_RS03105 (SSUD12_0594) - 602830..603591 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  SSUD12_RS03110 (SSUD12_0595) micA 603785..604489 (+) 705 WP_002935840.1 response regulator YycF Regulator
  SSUD12_RS03115 (SSUD12_0596) micB 604482..605831 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SSUD12_RS03120 (SSUD12_0597) vicX 605838..606641 (+) 804 WP_014637679.1 MBL fold metallo-hydrolase Regulator
  SSUD12_RS10995 (SSUD12_0598) vga(F) 606899..608284 (+) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  SSUD12_RS03130 (SSUD12_0599) pbp2b 608376..610445 (+) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  SSUD12_RS03135 (SSUD12_0600) recR 610454..611050 (+) 597 WP_014637682.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29673.78 Da        Isoelectric Point: 5.7755

>NTDB_id=49782 SSUD12_RS03120 WP_014637679.1 605838..606641(+) (vicX) [Streptococcus suis D12]
MIGKGFNYSILASGSSGNCFFLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
TQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=49782 SSUD12_RS03120 WP_014637679.1 605838..606641(+) (vicX) [Streptococcus suis D12]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTTCCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCATTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCAGGTTCATATTCATGGAATTTGAA
GCAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CAAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAATTG
ACTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SGQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768

Multiple sequence alignment