Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KIP81_RS09740 Genome accession   NZ_CP075172
Coordinates   1974852..1975946 (+) Length   364 a.a.
NCBI ID   WP_243602913.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969852..1980946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS09715 (KIP81_09700) pgsA 1970285..1970839 (-) 555 WP_004233663.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KIP81_RS09720 (KIP81_09705) - 1970849..1971778 (-) 930 WP_243602910.1 RodZ domain-containing protein -
  KIP81_RS09725 (KIP81_09710) - 1971845..1973134 (-) 1290 WP_243602911.1 pitrilysin family protein -
  KIP81_RS09730 (KIP81_09715) - 1973135..1974379 (-) 1245 WP_243602912.1 pitrilysin family protein -
  KIP81_RS09735 (KIP81_09720) yaaA 1974466..1974849 (+) 384 WP_021143377.1 S4 domain-containing protein YaaA -
  KIP81_RS09740 (KIP81_09725) recF 1974852..1975946 (+) 1095 WP_243602913.1 DNA replication/repair protein RecF Machinery gene
  KIP81_RS09745 (KIP81_09730) - 1976013..1976879 (-) 867 WP_243602914.1 GRP family sugar transporter -
  KIP81_RS09750 (KIP81_09735) guaB 1977122..1978603 (-) 1482 WP_021143381.1 IMP dehydrogenase -
  KIP81_RS09755 (KIP81_09740) trpS 1978831..1979853 (-) 1023 WP_004233676.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42046.41 Da        Isoelectric Point: 8.8863

>NTDB_id=497463 KIP81_RS09740 WP_243602913.1 1974852..1975946(+) (recF) [Streptococcus equinus strain SheepZ001]
MWIQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRLDKELIHFQEKELRVSGNLQRSTGV
VPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NTYLKTAEKVDIDFLAVLDEQLADFGSRVMEHRLDFIANLEKEADRYHYTISDGVEHLKIHYLSSVPFDKKTDIKEQFLK
TLEKNHKRDIFKKNTGAGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKNVTGDYPILLLDDVMSELDNYRQ
TELLKMIIAKNVQTFITTTSLEHLSQLPKELKIFTVTKGHIQEN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=497463 KIP81_RS09740 WP_243602913.1 1974852..1975946(+) (recF) [Streptococcus equinus strain SheepZ001]
ATGTGGATTCAAAAAATAGCCTTAAAAAATTACCGTAATTATTTAAATAATGAACTTGAATTTTCCCCGGGACTCAATGT
TTTTATTGGGAAAAATGCCCAAGGAAAAACTAATTTCTTAGAAGCTATTTATTTTTTATCTTTAACTCGCAGCCACCGTA
CACGCTTAGATAAAGAGCTAATTCATTTTCAAGAAAAAGAACTCCGCGTCTCAGGTAATTTACAACGCTCAACTGGGGTA
GTTCCTCTAGAGATCGACCTTTCAAGCAAAGGGCGTGTTACCAAAATCAATCACTTAAAACAAGCTAAATTATCTGATTA
CATTGGTGTAATGACTGTTGTTCTTTTTGCTCCCGAGGATTTGCAACTCATAAAAGGGGCACCAAGTCTTCGTCGCAAAT
TTATCGATATCGACCTTGGACAAATCAAGCCAGTCTATTTATCTGATTTATCAAATTACAACCATGTTCTTAAACAGCGT
AATACCTACCTTAAAACGGCTGAAAAAGTCGATATTGACTTTCTAGCAGTACTTGACGAACAGCTAGCCGACTTTGGTAG
CCGTGTTATGGAGCACCGTCTAGATTTTATTGCTAATTTAGAAAAAGAAGCTGATCGCTACCACTACACCATTTCTGATG
GCGTAGAACATTTGAAAATTCACTATTTATCATCCGTACCTTTTGATAAAAAAACTGATATCAAAGAACAATTTTTAAAG
ACTTTAGAAAAAAATCACAAACGTGATATTTTCAAAAAAAATACTGGTGCTGGTCCACACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCTGCTAATTTTGGAAGTCAAGGTCAGCATCGTAGCCTAATTTTATCTCTAAAAATGGCTGAAATTG
AGCTCATCAAAAATGTTACGGGCGATTATCCGATTTTACTTCTCGACGATGTTATGAGTGAGTTAGATAATTACAGACAA
ACTGAGCTACTGAAAATGATTATCGCTAAAAATGTTCAGACTTTCATCACAACAACAAGTCTTGAACATTTATCACAACT
CCCCAAAGAATTAAAAATTTTTACTGTTACCAAAGGACATATTCAAGAGAACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.286

100

0.643
  recF Bacillus subtilis subsp. subtilis str. 168

44.687

100

0.451