Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KIP81_RS04155 Genome accession   NZ_CP075172
Coordinates   814627..816423 (+) Length   598 a.a.
NCBI ID   WP_243603269.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 809627..821423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS04130 (KIP81_04135) - 810321..811361 (+) 1041 WP_243603265.1 ABC transporter permease -
  KIP81_RS04135 (KIP81_04140) - 811370..812056 (+) 687 WP_243603266.1 ABC transporter ATP-binding protein -
  KIP81_RS04140 (KIP81_04145) - 812127..812456 (+) 330 WP_074669358.1 potassium channel family protein -
  KIP81_RS04145 (KIP81_04150) - 812506..813177 (-) 672 WP_243603267.1 Crp/Fnr family transcriptional regulator -
  KIP81_RS04150 (KIP81_04155) - 813363..814388 (+) 1026 WP_243603268.1 YeiH family protein -
  KIP81_RS04155 (KIP81_04160) uvrC 814627..816423 (+) 1797 WP_243603269.1 excinuclease ABC subunit UvrC Machinery gene
  KIP81_RS04160 (KIP81_04165) - 816410..816784 (+) 375 WP_243603270.1 ACT domain-containing protein -
  KIP81_RS04165 (KIP81_04170) - 816809..817765 (+) 957 WP_243603271.1 2-dehydropantoate 2-reductase N-terminal domain-containing protein -
  KIP81_RS04170 (KIP81_04175) - 817880..819610 (+) 1731 WP_243603272.1 hypothetical protein -
  KIP81_RS04175 (KIP81_04180) - 819732..820334 (+) 603 WP_243603273.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69002.63 Da        Isoelectric Point: 9.1155

>NTDB_id=497403 KIP81_RS04155 WP_243603269.1 814627..816423(+) (uvrC) [Streptococcus equinus strain SheepZ001]
MNELIKHKLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVEMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMN
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHFVPKEVFIPQDIDEELVKA
VVDTKVIKPQRGEKKQLVNLATKNARVSLQQKFDLLEKDIRKTHGAIENIGELLNIPKPVRIEAFDNSNIQGTSPVAGMV
VFVNGKPSKKDYRKFKIKTVVGPDDYASMREVIYRRYSRVMKDGLTPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPNIQKADVDDIVNCGVPRNVAIAVKEKLAEEKVDVNH

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=497403 KIP81_RS04155 WP_243603269.1 814627..816423(+) (uvrC) [Streptococcus equinus strain SheepZ001]
ATGAATGAACTGATTAAACACAAATTGGAATTGCTTCCAGATAGCCCTGGATGCTATATCCATAAAGATAAAAACGGCAA
AATTATCTATGTCGGAAAGGCTAAAAATCTCAAGAATCGTGTGCGCAGCTACTTTCACGGTAGCCACAATACCAAGACAG
AACTCTTGGTTTCTGAGATTGAAGATTTTGAATACATTGTTACTGGGTCAAATACAGAAGCCCTTCTTCTTGAAATCAAT
CTGATTCAAGAAAACATGCCAAAGTATAACATCAAGCTAAAAGATGACAAATCTTACCCATTCATCAAAATCACGGTGAA
TGAACAGTACCCACGCTTGATGATTACTCGCCAAATCAAAAAAGATGGTGCTATGTATTTTGGACCATACCCAGATTCTG
GTGCTGCGACAGAAATCAAACGTCTGCTAGACCGCATTTTCCCATTCAAAAAATGTACAAATCCTGCTAACAAGGTTTGT
TTTTATTACCATTTGGGGCAATGTAAAGCTCACACAATTTGTCATGTTGACCATGATTATTTTGTTGAAATGGCGCAAGA
CGTCAAGAATTTTCTTGATGGCAAAGATAATAAAATCGTCGATGGCTTGAAAGACAAAATGCAAAAAGCGTCAGACATGA
TGGAATTTGAACGTGCGGCAGAATACCGTGATTTATTGCAAGCTATCTCAACACTTCGTACCAAACAACGTGTCATGAAC
CAAGATATGATGGACCGTGATATTTTTGGTTATTATGTCGACAAAGGTTGGATGTGTGTTCAGGTATTCTTTGTTCGCCA
AGGAAAACTCATCCAACGTGATGTCAATATGTTCCCGTATTACAATGACCCAGAGGAAGATTTCTTAACCTATGTCGGAC
AATTTTACCGAGACAGCAAGCATTTTGTGCCAAAAGAAGTCTTTATTCCTCAGGACATTGACGAAGAATTAGTTAAAGCA
GTTGTTGATACCAAAGTCATCAAACCACAACGTGGTGAGAAGAAGCAGCTGGTAAATCTTGCGACAAAAAACGCGCGTGT
CAGCCTGCAACAAAAATTTGACCTGCTAGAAAAAGATATCCGCAAAACACACGGCGCTATTGAAAATATCGGTGAATTGC
TCAATATTCCAAAACCTGTGCGCATTGAAGCCTTTGATAACTCAAATATTCAAGGAACAAGCCCAGTTGCGGGGATGGTT
GTCTTTGTAAATGGAAAACCAAGTAAGAAAGATTACCGTAAATTTAAAATTAAAACTGTAGTCGGCCCAGATGACTATGC
CAGCATGCGCGAGGTCATTTACCGTAGATACAGTCGGGTCATGAAAGACGGTCTAACTCCGCCAGATTTGATTATCATCG
ATGGTGGTCAAGGTCAGGTTAATGTTGCGCGTGATGTCATTGAAAATAAACTTGGACTCGATATTCCAATCGCTGGTCTG
CAAAAAAATGACAAGCACCAAACACACGAATTGCTCTTTGGTGACCCATTAGAAGTGGTCGAATTGCCACGAAACTCTGA
AGAATTCTTCCTCTTACAGCGTATTCAAGATGAAGTTCACCGATTTGCCATTACTTTTCATCGTCAATTACGCTCTAAAA
ATTCATTCTCATCAAAACTGGATGGCATTGCTGGCTTGGGACCAAAACGCAAGCAATTACTCATGAAACACTTCAAGAGC
TTGCCAAACATTCAAAAAGCAGACGTTGACGACATCGTCAACTGCGGTGTTCCACGAAACGTTGCTATTGCTGTGAAAGA
AAAACTAGCTGAGGAGAAAGTGGATGTTAACCATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrB/uvrC motif (UVR)

(199-230)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

78.512

100

0.794
  uvrC Streptococcus pneumoniae R6

78.347

100

0.793
  uvrC Streptococcus pneumoniae D39

78.347

100

0.793