Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIL85_RS23040 Genome accession   NZ_CP075006
Coordinates   4438184..4438921 (+) Length   245 a.a.
NCBI ID   WP_400235443.1    Uniprot ID   -
Organism   Escherichia coli strain 6629     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4433184..4443921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL85_RS23025 (KIL85_22705) clpC 4433638..4436211 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KIL85_RS23030 (KIL85_22710) yfiH 4436341..4437072 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIL85_RS23035 (KIL85_22715) rluD 4437069..4438049 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIL85_RS23040 (KIL85_22720) comL 4438184..4438921 (+) 738 WP_400235443.1 outer membrane protein assembly factor BamD Machinery gene
  KIL85_RS23045 (KIL85_22725) raiA 4439192..4439533 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIL85_RS23050 (KIL85_22730) pheL 4439637..4439684 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIL85_RS23055 (KIL85_22735) pheA 4439783..4440943 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIL85_RS23060 (KIL85_22740) tyrA 4440986..4442107 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIL85_RS23065 (KIL85_22745) aroF 4442118..4443188 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIL85_RS23070 (KIL85_22750) yfiL 4443398..4443763 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27844.37 Da        Isoelectric Point: 6.4874

>NTDB_id=497162 KIL85_RS23040 WP_400235443.1 4438184..4438921(+) (comL) [Escherichia coli strain 6629]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQQDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=497162 KIL85_RS23040 WP_400235443.1 4438184..4438921(+) (comL) [Escherichia coli strain 6629]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCAGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371