Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   L897_RS06905 Genome accession   NC_021807
Coordinates   1371118..1372152 (-) Length   344 a.a.
NCBI ID   WP_020837588.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1366118..1377152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS06870 (L897_07055) - 1366894..1367196 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  L897_RS06875 (L897_07060) rnpM 1367189..1367485 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  L897_RS06880 (L897_07065) nusA 1367501..1368658 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  L897_RS06885 (L897_07070) rimP 1368833..1369369 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  L897_RS06895 (L897_07080) trmB 1369628..1370263 (-) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  L897_RS06900 (L897_07085) ccrZ 1370263..1371054 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  L897_RS06905 (L897_07090) pptB 1371118..1372152 (-) 1035 WP_020837588.1 ABC transporter permease Regulator
  L897_RS06910 (L897_07095) pptA 1372155..1372880 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  L897_RS06915 (L897_07100) - 1372952..1373371 (+) 420 WP_002983376.1 HIT family protein -
  L897_RS06920 (L897_07105) - 1373368..1373724 (+) 357 WP_002988657.1 hypothetical protein -
  L897_RS06925 (L897_07110) brpA 1373834..1375108 (-) 1275 WP_020837594.1 biofilm formation/cell division transcriptional regulator BrpA -
  L897_RS06930 (L897_07115) - 1375117..1375641 (-) 525 WP_020837596.1 GNAT family N-acetyltransferase -
  L897_RS06935 (L897_07120) tsaE 1375616..1376077 (-) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40260.49 Da        Isoelectric Point: 10.3713

>NTDB_id=49702 L897_RS06905 WP_020837588.1 1371118..1372152(-) (pptB) [Streptococcus pyogenes HSC5]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFVLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=49702 L897_RS06905 WP_020837588.1 1371118..1372152(-) (pptB) [Streptococcus pyogenes HSC5]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTGTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43

  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427


Multiple sequence alignment