Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SSU12_RS01225 Genome accession   NC_017619
Coordinates   222759..223472 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis SS12     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 217759..228472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU12_RS01215 (SSU12_0218) treC 218825..220450 (-) 1626 WP_011921814.1 alpha,alpha-phosphotrehalase -
  SSU12_RS01220 (SSU12_0219) treP 220531..222525 (-) 1995 WP_014636547.1 PTS system trehalose-specific EIIBC component -
  SSU12_RS01225 (SSU12_0220) treR 222759..223472 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  SSU12_RS01230 (SSU12_0221) - 223530..223841 (+) 312 WP_002935948.1 hypothetical protein -
  SSU12_RS01235 (SSU12_0222) - 223838..224386 (+) 549 WP_002935945.1 CvpA family protein -
  SSU12_RS01240 (SSU12_0223) - 224537..226870 (+) 2334 WP_014636548.1 endonuclease MutS2 -
  SSU12_RS01245 (SSU12_0224) - 226894..227547 (+) 654 WP_011921818.1 GNAT family N-acetyltransferase -
  SSU12_RS01250 (SSU12_0225) trxA 227754..228068 (+) 315 WP_012775426.1 thioredoxin -
  SSU12_RS11285 - 228296..228346 (-) 51 WP_353735889.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=49674 SSU12_RS01225 WP_012774930.1 222759..223472(+) (treR) [Streptococcus suis SS12]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=49674 SSU12_RS01225 WP_012774930.1 222759..223472(+) (treR) [Streptococcus suis SS12]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment