Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IOD65_RS11025 Genome accession   NZ_CP063769
Coordinates   2320752..2321132 (-) Length   126 a.a.
NCBI ID   WP_005069533.1    Uniprot ID   A0A022IXP4
Organism   Acinetobacter sp. Ac-14     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315752..2326132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS10995 (IOD65_10995) tadA 2315815..2316318 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  IOD65_RS11000 (IOD65_11000) - 2316324..2317448 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  IOD65_RS11005 (IOD65_11005) ung 2317445..2318158 (-) 714 WP_005069527.1 uracil-DNA glycosylase -
  IOD65_RS11010 (IOD65_11010) - 2318212..2318808 (-) 597 WP_002121363.1 6-pyruvoyl trahydropterin synthase family protein -
  IOD65_RS11015 (IOD65_11015) gspK 2319037..2319996 (-) 960 WP_005069529.1 type II secretion system minor pseudopilin GspK -
  IOD65_RS11020 (IOD65_11020) xcpW 2319997..2320752 (-) 756 WP_005069530.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IOD65_RS11025 (IOD65_11025) xcpV 2320752..2321132 (-) 381 WP_005069533.1 type II secretion system minor pseudopilin GspI Machinery gene
  IOD65_RS11030 (IOD65_11030) - 2321122..2321676 (-) 555 WP_005069534.1 type II secretion system protein -
  IOD65_RS11035 (IOD65_11035) - 2321683..2322291 (-) 609 WP_005069536.1 TetR/AcrR family transcriptional regulator -
  IOD65_RS11040 (IOD65_11040) - 2322328..2323101 (-) 774 WP_005069538.1 TatD family hydrolase -
  IOD65_RS11045 (IOD65_11045) - 2323119..2323460 (-) 342 WP_002121335.1 PilZ domain-containing protein -
  IOD65_RS11050 (IOD65_11050) - 2323471..2324451 (-) 981 WP_005069541.1 DNA polymerase III, delta' subunit -
  IOD65_RS11055 (IOD65_11055) kdsB 2324465..2325226 (-) 762 WP_002121419.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13934.09 Da        Isoelectric Point: 9.4463

>NTDB_id=496666 IOD65_RS11025 WP_005069533.1 2320752..2321132(-) (xcpV) [Acinetobacter sp. Ac-14]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDVQVSLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=496666 IOD65_RS11025 WP_005069533.1 2320752..2321132(-) (xcpV) [Acinetobacter sp. Ac-14]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTGGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCACAGTTTGTCGCAATGAATGAAGTTG
CTTTAATGGAAATAAATCAGGAATGGCTCGAAGGTACACAAAGCAAGCAAGTGACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCTGCGCAATCTACAATTAGTCCAAATGTTCAAAAAGTAGATGTACAAGTTAGTTTATATGATTCTGATAAGGG
GAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTACCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A022IXP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

94.444

100

0.944