Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IOD65_RS03000 Genome accession   NZ_CP063769
Coordinates   629153..629782 (-) Length   209 a.a.
NCBI ID   WP_005067250.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624153..634782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02965 (IOD65_02965) mlaE 624486..625262 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  IOD65_RS02970 (IOD65_02970) - 625262..625942 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IOD65_RS02975 (IOD65_02975) - 625969..626610 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  IOD65_RS02980 (IOD65_02980) - 626622..626909 (+) 288 WP_005067244.1 lipid asymmetry maintenance protein MlaB -
  IOD65_RS02985 (IOD65_02985) - 626982..627995 (-) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  IOD65_RS02990 (IOD65_02990) - 628154..628735 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  IOD65_RS02995 (IOD65_02995) - 628750..629151 (+) 402 WP_002116701.1 NUDIX hydrolase -
  IOD65_RS03000 (IOD65_03000) comF 629153..629782 (-) 630 WP_005067250.1 ComF family protein Machinery gene
  IOD65_RS03005 (IOD65_03005) recG 629775..631820 (-) 2046 WP_005067253.1 ATP-dependent DNA helicase RecG -
  IOD65_RS03010 (IOD65_03010) - 631841..632656 (+) 816 WP_005067256.1 NAD(P)H-binding protein -
  IOD65_RS03015 (IOD65_03015) - 632736..633719 (+) 984 WP_002117028.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24405.57 Da        Isoelectric Point: 9.9489

>NTDB_id=496657 IOD65_RS03000 WP_005067250.1 629153..629782(-) (comF) [Acinetobacter sp. Ac-14]
MFNFLNFQPLIQLFSPCSLCELGIREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLVLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=496657 IOD65_RS03000 WP_005067250.1 629153..629782(-) (comF) [Acinetobacter sp. Ac-14]
ATGTTTAATTTTTTAAACTTTCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATACGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCCTTAGTACTCGCCAATATATTAAGCAAACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAACACTCTCAAAAAGGACTTTCTCGGCTAGAACGCTTTGAAAATATCGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833