Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IOD65_RS02645 Genome accession   NZ_CP063769
Coordinates   558391..558873 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553391..563873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02635 (IOD65_02635) pilX 553708..554517 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IOD65_RS02640 (IOD65_02640) pilY1 554529..558380 (+) 3852 WP_194156773.1 PilC/PilY family type IV pilus protein Machinery gene
  IOD65_RS02645 (IOD65_02645) pilY2 558391..558873 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  IOD65_RS02650 (IOD65_02650) pilE 558870..559295 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  IOD65_RS02655 (IOD65_02655) rpsP 559443..559694 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IOD65_RS02660 (IOD65_02660) rimM 559714..560262 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  IOD65_RS02665 (IOD65_02665) trmD 560305..561060 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IOD65_RS02670 (IOD65_02670) rplS 561280..561648 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  IOD65_RS02675 (IOD65_02675) - 561700..562641 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -
  IOD65_RS02680 (IOD65_02680) - 562757..563788 (-) 1032 WP_005067141.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=496655 IOD65_RS02645 WP_002116770.1 558391..558873(+) (pilY2) [Acinetobacter sp. Ac-14]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=496655 IOD65_RS02645 WP_002116770.1 558391..558873(+) (pilY2) [Acinetobacter sp. Ac-14]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45