Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IOD65_RS02620 Genome accession   NZ_CP063769
Coordinates   551683..552156 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546683..557156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02595 (IOD65_02595) - 547145..549250 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  IOD65_RS02600 (IOD65_02600) - 549266..549421 (-) 156 Protein_500 hypothetical protein -
  IOD65_RS02605 (IOD65_02605) rpoZ 549460..549738 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  IOD65_RS02610 (IOD65_02610) gmk 549811..550440 (-) 630 WP_002116973.1 guanylate kinase -
  IOD65_RS02615 (IOD65_02615) ispH 550563..551513 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IOD65_RS02620 (IOD65_02620) fimU 551683..552156 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IOD65_RS02625 (IOD65_02625) pilV 552150..552710 (+) 561 WP_080631029.1 type IV pilus modification protein PilV Machinery gene
  IOD65_RS02630 (IOD65_02630) pilW 552710..553711 (+) 1002 WP_005067125.1 PilW family protein Machinery gene
  IOD65_RS02635 (IOD65_02635) pilX 553708..554517 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=496650 IOD65_RS02620 WP_005067119.1 551683..552156(+) (fimU) [Acinetobacter sp. Ac-14]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=496650 IOD65_RS02620 WP_005067119.1 551683..552156(+) (fimU) [Acinetobacter sp. Ac-14]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAACATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885