Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IOD65_RS02625 Genome accession   NZ_CP063769
Coordinates   552150..552710 (+) Length   186 a.a.
NCBI ID   WP_080631029.1    Uniprot ID   -
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547150..557710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS02600 (IOD65_02600) - 549266..549421 (-) 156 Protein_500 hypothetical protein -
  IOD65_RS02605 (IOD65_02605) rpoZ 549460..549738 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  IOD65_RS02610 (IOD65_02610) gmk 549811..550440 (-) 630 WP_002116973.1 guanylate kinase -
  IOD65_RS02615 (IOD65_02615) ispH 550563..551513 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IOD65_RS02620 (IOD65_02620) fimU 551683..552156 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IOD65_RS02625 (IOD65_02625) pilV 552150..552710 (+) 561 WP_080631029.1 type IV pilus modification protein PilV Machinery gene
  IOD65_RS02630 (IOD65_02630) pilW 552710..553711 (+) 1002 WP_005067125.1 PilW family protein Machinery gene
  IOD65_RS02635 (IOD65_02635) pilX 553708..554517 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19823.85 Da        Isoelectric Point: 7.9110

>NTDB_id=496651 IOD65_RS02625 WP_080631029.1 552150..552710(+) (pilV) [Acinetobacter sp. Ac-14]
MLMQGSKQKAQVGVGLLEVLVALILIAIGVLGYVALQVRAMDASSEALSKSQAIMIMRGLAENIRVNSSQASQYPAFVRS
YSNYSSTTAAPTLCFNAACTPSQLAQFDAYQAARNADQLGMKITMTNCPGVTSTMAQQRQCLFVFWGKTAPVITTNEGVT
SADVSSCMGTNGVYVNNSNCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=496651 IOD65_RS02625 WP_080631029.1 552150..552710(+) (pilV) [Acinetobacter sp. Ac-14]
ATGTTAATGCAGGGCTCTAAACAAAAAGCTCAAGTTGGGGTGGGTTTATTAGAAGTGTTGGTTGCCCTAATTTTAATTGC
GATAGGGGTTTTAGGATATGTTGCCTTGCAAGTCCGTGCTATGGATGCTTCTTCAGAGGCATTAAGCAAATCTCAAGCGA
TTATGATCATGAGAGGATTAGCAGAAAACATTCGCGTAAATAGTTCTCAAGCTAGTCAGTATCCCGCATTTGTCCGTAGT
TATAGCAATTATTCATCTACCACCGCAGCTCCTACATTGTGTTTCAATGCGGCTTGTACACCTTCTCAGCTTGCCCAATT
TGATGCATATCAAGCAGCAAGAAATGCTGATCAACTTGGCATGAAAATTACCATGACAAATTGCCCAGGGGTTACAAGCA
CAATGGCCCAGCAGAGGCAATGTTTGTTTGTTTTTTGGGGAAAAACTGCTCCAGTAATTACAACAAATGAGGGAGTCACG
AGCGCGGATGTGTCGAGCTGTATGGGTACAAATGGCGTTTATGTCAATAATTCGAACTGTTTAATGATGGAGGCATATTA
A

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

83.871

100

0.839