Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IM712_RS09205 Genome accession   NZ_CP063768
Coordinates   1839685..1840329 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain KMU01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834685..1845329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM712_RS09180 - 1835128..1835469 (-) 342 WP_014305721.1 hypothetical protein -
  IM712_RS09185 degQ 1835934..1836074 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  IM712_RS09190 - 1836226..1837137 (+) 912 WP_031378407.1 polyprenyl synthetase family protein -
  IM712_RS09195 comX 1837137..1837301 (+) 165 WP_007613432.1 competence pheromone ComX -
  IM712_RS09200 comP 1837313..1839604 (+) 2292 WP_077722768.1 histidine kinase Regulator
  IM712_RS09205 comA 1839685..1840329 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  IM712_RS09210 - 1840351..1840734 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  IM712_RS09215 mnhG 1840774..1841148 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  IM712_RS09220 - 1841132..1841416 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  IM712_RS09225 - 1841416..1841892 (-) 477 WP_077722767.1 Na+/H+ antiporter subunit E -
  IM712_RS09230 - 1841898..1843378 (-) 1481 Protein_1779 Na+/H+ antiporter subunit D -
  IM712_RS09235 - 1843371..1843712 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  IM712_RS09240 - 1843712..1844143 (-) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=496597 IM712_RS09205 WP_003152052.1 1839685..1840329(+) (comA) [Bacillus velezensis strain KMU01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=496597 IM712_RS09205 WP_003152052.1 1839685..1840329(+) (comA) [Bacillus velezensis strain KMU01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864