Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF732_RS12735 Genome accession   NZ_CP063745
Coordinates   2616991..2617386 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_212     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2611991..2622386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF732_RS12710 (IF732_12630) - 2613160..2613564 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF732_RS12715 (IF732_12635) - 2614217..2614450 (+) 234 WP_000384523.1 DUF1146 family protein -
  IF732_RS12720 (IF732_12640) murA 2614561..2615826 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF732_RS12725 (IF732_12645) fabZ 2615860..2616300 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF732_RS12730 (IF732_12650) - 2616357..2616797 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF732_RS12735 (IF732_12655) ssb 2616991..2617386 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF732_RS12740 (IF732_12660) sceD 2617775..2618470 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  IF732_RS12745 (IF732_12665) tenA 2618857..2619546 (+) 690 WP_000396068.1 thiaminase II -
  IF732_RS12750 (IF732_12670) thiD 2619539..2620369 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF732_RS12755 (IF732_12675) thiM 2620353..2621144 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  IF732_RS12760 (IF732_12680) thiE 2621146..2621787 (+) 642 WP_084590298.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=496447 IF732_RS12735 WP_000932694.1 2616991..2617386(+) (ssb) [Staphylococcus aureus strain NAS_AN_212]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=496447 IF732_RS12735 WP_000932694.1 2616991..2617386(+) (ssb) [Staphylococcus aureus strain NAS_AN_212]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992