Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BACVE_RS20710 Genome accession   NZ_CP063687
Coordinates   4137425..4138324 (-) Length   299 a.a.
NCBI ID   WP_017417773.1    Uniprot ID   A0A411A614
Organism   Bacillus velezensis strain NST6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4132425..4143324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS20695 (BACVE_004177) xerC 4132809..4133726 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  BACVE_RS20700 (BACVE_004178) trmFO 4133796..4135103 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BACVE_RS20705 (BACVE_004179) topA 4135168..4137243 (-) 2076 WP_025649465.1 type I DNA topoisomerase -
  BACVE_RS20710 (BACVE_004180) dprA 4137425..4138324 (-) 900 WP_017417773.1 DNA-processing protein DprA Machinery gene
  BACVE_RS20715 (BACVE_004181) sucD 4138389..4139291 (-) 903 WP_014417763.1 succinate--CoA ligase subunit alpha -
  BACVE_RS20720 (BACVE_004182) sucC 4139320..4140477 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BACVE_RS20725 (BACVE_004183) - 4140652..4140933 (-) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32834.00 Da        Isoelectric Point: 8.4593

>NTDB_id=496321 BACVE_RS20710 WP_017417773.1 4137425..4138324(-) (dprA) [Bacillus velezensis strain NST6]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTALSEGKTVPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSTRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKLGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=496321 BACVE_RS20710 WP_017417773.1 4137425..4138324(-) (dprA) [Bacillus velezensis strain NST6]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGCTTTATCAGAAGGGAAAACAGTGCCCGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGCATTACTGTCATT
CCGATTTCATCAACCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGGAGAAAACTCGGGATTGTAGGAACGCGGAAACCGACAGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A614

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Legionella pneumophila strain ERS1305867

41.948

89.298

0.375
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368