Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SSUJS14_RS04635 Genome accession   NC_017618
Coordinates   937616..938842 (+) Length   408 a.a.
NCBI ID   WP_014636391.1    Uniprot ID   -
Organism   Streptococcus suis JS14     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 932616..943842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUJS14_RS04600 (SSUJS14_0913) - 933620..933955 (+) 336 WP_002934966.1 hypothetical protein -
  SSUJS14_RS04605 (SSUJS14_0914) - 934051..935010 (+) 960 WP_012775086.1 ROK family glucokinase -
  SSUJS14_RS04610 (SSUJS14_0915) - 935136..935414 (+) 279 WP_012775087.1 hypothetical protein -
  SSUJS14_RS04615 (SSUJS14_0916) - 935426..935728 (+) 303 WP_012775088.1 hypothetical protein -
  SSUJS14_RS04620 (SSUJS14_0917) - 935781..936620 (+) 840 WP_014636389.1 thymidylate synthase -
  SSUJS14_RS04625 (SSUJS14_0918) - 936906..937418 (+) 513 WP_014636390.1 dihydrofolate reductase -
  SSUJS14_RS04635 (SSUJS14_0920) clpX 937616..938842 (+) 1227 WP_014636391.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SSUJS14_RS04640 (SSUJS14_0921) yihA 938898..939485 (+) 588 WP_012775089.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SSUJS14_RS04645 (SSUJS14_0922) ndk 939508..939921 (+) 414 WP_012028095.1 nucleoside-diphosphate kinase -
  SSUJS14_RS04650 (SSUJS14_0923) - 940025..940696 (+) 672 WP_011922364.1 HIRAN domain-containing protein -
  SSUJS14_RS04655 (SSUJS14_0924) lepA 940978..942810 (+) 1833 WP_002943192.1 translation elongation factor 4 -
  SSUJS14_RS04660 (SSUJS14_0925) - 942860..943042 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45352.85 Da        Isoelectric Point: 4.6382

>NTDB_id=49630 SSUJS14_RS04635 WP_014636391.1 937616..938842(+) (clpX) [Streptococcus suis JS14]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTFLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETMLDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=49630 SSUJS14_RS04635 WP_014636391.1 937616..938842(+) (clpX) [Streptococcus suis JS14]
ATGGCTGTTAAGCATACACATGAGCTAATCTATTGCTCATTTTGCGGAAAAAATCAAGAAGAAGTTAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGATACGCCAAAGCCACAAGAATTACTCAATATCCTGAACAACTACGTCATCGGACAGGATCGTGCA
AAACGTGCTTTAGCAGTAGCCGTTTACAACCACTACAAACGTATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCAGGTTATGTTGGTGAAGACGTAGAAAATATCCTC
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTAGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAAGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGTAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTCGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACATTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAAACTGGTGCTCGTGGACTTCGCTCTATCATTGAAGAAACGA
TGTTGGATGTCATGTTTGAGGTGCCAGGTCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

82.885

100

0.831
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.96

98.529

0.571

Multiple sequence alignment