Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BACVE_RS13045 Genome accession   NZ_CP063687
Coordinates   2591657..2592301 (+) Length   214 a.a.
NCBI ID   WP_071181952.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2586657..2597301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS13020 (BACVE_002629) - 2587057..2587398 (-) 342 WP_014418765.1 hypothetical protein -
  BACVE_RS13025 (BACVE_002630) degQ 2587863..2588003 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BACVE_RS13030 (BACVE_002631) comQ 2588134..2589120 (+) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  BACVE_RS13035 (BACVE_002632) comX 2589083..2589253 (+) 171 WP_025650218.1 competence pheromone ComX Regulator
  BACVE_RS13040 (BACVE_002633) comP 2589273..2591576 (+) 2304 WP_025650219.1 histidine kinase Regulator
  BACVE_RS13045 (BACVE_002634) comA 2591657..2592301 (+) 645 WP_071181952.1 response regulator transcription factor Regulator
  BACVE_RS13050 (BACVE_002635) - 2592323..2592706 (+) 384 WP_065180456.1 hotdog fold thioesterase -
  BACVE_RS13055 (BACVE_002636) mnhG 2592746..2593120 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BACVE_RS13060 (BACVE_002637) - 2593104..2593388 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BACVE_RS13065 (BACVE_002638) - 2593388..2593864 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  BACVE_RS13070 (BACVE_002639) - 2593870..2595351 (-) 1482 WP_128974217.1 Na+/H+ antiporter subunit D -
  BACVE_RS13075 (BACVE_002640) - 2595344..2595685 (-) 342 WP_022553706.1 Na(+)/H(+) antiporter subunit C -
  BACVE_RS13080 (BACVE_002641) - 2595685..2596116 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24312.74 Da        Isoelectric Point: 4.9953

>NTDB_id=496293 BACVE_RS13045 WP_071181952.1 2591657..2592301(+) (comA) [Bacillus velezensis strain NST6]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSPPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=496293 BACVE_RS13045 WP_071181952.1 2591657..2592301(+) (comA) [Bacillus velezensis strain NST6]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTCCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855