Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BACVE_RS06580 Genome accession   NZ_CP063687
Coordinates   1326398..1326835 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain NST6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1321398..1331835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACVE_RS06565 (BACVE_001330) - 1324284..1324646 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  BACVE_RS06570 (BACVE_001331) hxlA 1324878..1325513 (+) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  BACVE_RS06575 (BACVE_001332) hxlB 1325510..1326067 (+) 558 WP_025650327.1 6-phospho-3-hexuloisomerase -
  BACVE_RS06580 (BACVE_001333) nucA/comI 1326398..1326835 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BACVE_RS06585 (BACVE_001334) nin/comJ 1326856..1327254 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  BACVE_RS06590 (BACVE_001335) - 1327295..1328731 (-) 1437 WP_104843069.1 family 1 glycosylhydrolase -
  BACVE_RS06595 (BACVE_001336) - 1328835..1329158 (-) 324 WP_007409357.1 YckD family protein -
  BACVE_RS06600 (BACVE_001337) - 1329230..1329664 (-) 435 WP_014416871.1 RDD family protein -
  BACVE_RS06605 (BACVE_001338) - 1329679..1330815 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=496268 BACVE_RS06580 WP_003156588.1 1326398..1326835(+) (nucA/comI) [Bacillus velezensis strain NST6]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=496268 BACVE_RS06580 WP_003156588.1 1326398..1326835(+) (nucA/comI) [Bacillus velezensis strain NST6]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641