Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IM698_RS09120 Genome accession   NZ_CP063682
Coordinates   2021239..2022627 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus strain ED144     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016239..2027627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS09105 (IM698_09085) melB 2016776..2018149 (+) 1374 WP_052878989.1 melibiose:sodium transporter MelB -
  IM698_RS09115 (IM698_09095) uvrB 2018906..2020936 (+) 2031 WP_248389739.1 excinuclease ABC subunit UvrB -
  IM698_RS09120 (IM698_09100) luxO 2021239..2022627 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IM698_RS09125 (IM698_09105) luxU 2022652..2022996 (+) 345 WP_248397373.1 quorum-sensing phosphorelay protein LuxU -
  IM698_RS09130 (IM698_09110) - 2023089..2023976 (-) 888 WP_248372219.1 YvcK family protein -
  IM698_RS09135 (IM698_09115) moaA 2024312..2025301 (+) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  IM698_RS09140 (IM698_09120) moaB 2025394..2025906 (+) 513 WP_065111001.1 molybdenum cofactor biosynthesis protein B -
  IM698_RS09145 (IM698_09125) moaC 2025919..2026398 (+) 480 WP_017093480.1 cyclic pyranopterin monophosphate synthase MoaC -
  IM698_RS09150 (IM698_09130) moaD 2026395..2026640 (+) 246 WP_065103215.1 molybdopterin synthase sulfur carrier subunit -
  IM698_RS09155 (IM698_09135) moaE 2026643..2027116 (+) 474 WP_004734024.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=496222 IM698_RS09120 WP_004734031.1 2021239..2022627(+) (luxO) [Vibrio splendidus strain ED144]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=496222 IM698_RS09120 WP_004734031.1 2021239..2022627(+) (luxO) [Vibrio splendidus strain ED144]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAATATTGTCGGCACTGGCCGCGACGCAATTGAAAGTTTGAATCATCGAA
TCCCAGACCTTATTTTGTTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCAGAAGTTCCTGTGATCTTCATGACGGCTCACGGCTCGATCGATACAGCCGTAGAAGCGATGCGTCATGGTTCTCAAGA
CTTCCTTATCAAACCGTGTGAAGCTGACCGACTTCGTATTACGGTGAATAATGCGATCCGCAAAGCCACCAAGCTTAAGA
ACAGCTCGGAACATCCGGGAAACCAGAATTACCAAGGTTTTATTGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGATTCTGCGGCATCGAGTAAAGCGAGTATTTTCATTACTGGTGAAAGTGGTACAGGTAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGCAAGCGTGGTGATAAGCCTTTCATCGCCATCAACTGTGCGGCAATTCCTAAAGACCTGATTGAGA
GTGAGCTGTTTGGCCACGTAAAAGGGGCGTTTACGGGCGCGGCAACAGACCGTCAAGGTGCAGCTGAATTAGCTGATGGC
GGTACACTGTTCCTCGATGAACTGTGTGAAATGGATCTTGAACTACAAACCAAGCTGTTGCGTTTTATCCAAACTGGTAC
TTTTCAAAAGGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTGCGCTTTGTTTGTGCGACCAACCGTGATCCTTGGAAAG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGCCTGTACGTGATTCCTCTGCACTTGCCGCCATTGCGTGAA
CGTGGTGAAGATGTCATCGAGATTGCATACTCATTATTGGGCTACATGTCGGTTGAAGAAGGCAAGGCGTTTGTGCGTTT
TGCTCAAGAAGTGTTGGATCGCTTTAACCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTGTTGAGAAACG
TGGTGGTTTTGAATAACGGTAAAGAGATTACTCTCAACATGCTTCCGCCACCGTTGAACCAACCGATTGAAAACAGTCTG
CGGTTGAAAGAGAAGCAGAATGAAGACATTACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATTAAAGCGTGTGATGGCAACATTCCTCGTGCGGCAGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37