Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IM698_RS06775 Genome accession   NZ_CP063682
Coordinates   1493066..1493671 (-) Length   201 a.a.
NCBI ID   WP_260810995.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1494644..1495878 1493066..1493671 flank 973


Gene organization within MGE regions


Location: 1493066..1495878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS06775 (IM698_06760) opaR 1493066..1493671 (-) 606 WP_260810995.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IM698_RS06780 (IM698_06765) hpt 1494009..1494539 (+) 531 WP_016784912.1 hypoxanthine phosphoribosyltransferase -
  IM698_RS06785 (IM698_06770) - 1494644..1495878 (+) 1235 WP_248371696.1 IS3 family transposase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23252.49 Da        Isoelectric Point: 6.2928

>NTDB_id=496220 IM698_RS06775 WP_260810995.1 1493066..1493671(-) (opaR) [Vibrio splendidus strain ED144]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGIFYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=496220 IM698_RS06775 WP_260810995.1 1493066..1493671(-) (opaR) [Vibrio splendidus strain ED144]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGCATTGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTCGCAACGGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCACGTGGTTCGCCAATTCTCTAACTTCCTTTCG
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTAAATGTGTGGTTCGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCGCTGTTCGTAACAACGAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGAGAAGTTTGTGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATTTTCTACTCGCTATTCATCCAAGCGAAACGTGTAGAAACGCCTGAAGAGCTTTC
AAGCTTAACGGATAGCTACCTAAATATGCTGTGCATCTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731