Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   INQ41_RS02800 Genome accession   NZ_CP063656
Coordinates   613517..614974 (-) Length   485 a.a.
NCBI ID   WP_193986025.1    Uniprot ID   A0A7S6UGS4
Organism   Novilysobacter ciconiae strain H21R20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 608517..619974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ41_RS02790 (INQ41_02790) - 608928..611426 (+) 2499 WP_193986023.1 S9 family peptidase -
  INQ41_RS02795 (INQ41_02795) - 611782..613380 (-) 1599 WP_193987175.1 SDR family NAD(P)-dependent oxidoreductase -
  INQ41_RS02800 (INQ41_02800) pilR 613517..614974 (-) 1458 WP_193986025.1 sigma-54 dependent transcriptional regulator Regulator
  INQ41_RS02805 (INQ41_02805) - 614996..616609 (-) 1614 WP_228076679.1 PAS domain-containing sensor histidine kinase -
  INQ41_RS02810 (INQ41_02810) sucC 616786..617949 (+) 1164 WP_193986029.1 ADP-forming succinate--CoA ligase subunit beta -
  INQ41_RS02815 (INQ41_02815) sucD 617974..618849 (+) 876 WP_193986030.1 succinate--CoA ligase subunit alpha -
  INQ41_RS02820 (INQ41_02820) - 619211..619909 (-) 699 WP_193986032.1 hypothetical protein -

Sequence

Protein


Download         Length: 485 a.a.        Molecular weight: 52622.25 Da        Isoelectric Point: 6.1102

>NTDB_id=496119 INQ41_RS02800 WP_193986025.1 613517..614974(-) (pilR) [Novilysobacter ciconiae strain H21R20]
MAETRSALIVDDERDIRELLVMTLGRMGLRCDTASSLGDARAHLARNRYDLCLTDMRLPDGSGIDLIAEISEQFPDTPVA
MITAFGNVDAAVEALKAGAFDFVAKPVELSVLRDLVRHALDLKEKPAVRANPENVATRLYGESPAMQQLRETITKVARSQ
APVYIAGESGVGKELVARTIHAEGSRGAGPFVPVNCGAIPNELMESEFFGHKKGSFTGAHADKPGLFHSADGGTLFLDEV
AELPLPMQVKLLRAIQEKSVKPVGANAEVMVDVRILSATHKDLAGMVADGRFRQDLYYRINVIELRVPPLRERLADLPGL
CAKIVQRLAADLGREPPALSAEAMDALGRYSFPGNVRELENILERAMAMADGDQLEMHDLHLPQTVTAHAPAHQAPREPG
VAPLQPLARGEQTPQAAAAAAGIDPRTIDPRDTATSALPSYIEEIERAAIQHALQENRYNKTRTAASLGITFRALRYKLK
KLGID

Nucleotide


Download         Length: 1458 bp        

>NTDB_id=496119 INQ41_RS02800 WP_193986025.1 613517..614974(-) (pilR) [Novilysobacter ciconiae strain H21R20]
ATGGCTGAGACACGCAGCGCTTTGATAGTCGATGACGAGCGCGATATCCGCGAGTTGCTGGTAATGACCCTGGGCCGCAT
GGGACTGCGCTGCGATACCGCATCCAGCCTGGGCGATGCCCGCGCGCACCTGGCCCGCAACCGTTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCCGGCATTGACCTGATCGCGGAGATTTCCGAGCAGTTCCCTGACACGCCGGTCGCG
ATGATCACCGCCTTCGGCAATGTGGACGCCGCGGTGGAGGCGCTCAAGGCGGGCGCGTTCGATTTCGTCGCCAAGCCGGT
CGAGCTGTCGGTGTTGCGCGACCTCGTCCGCCATGCGCTGGACCTCAAGGAGAAGCCGGCGGTACGGGCCAACCCGGAAA
ACGTCGCCACCCGCCTGTATGGCGAATCGCCCGCGATGCAGCAACTGCGCGAGACCATCACCAAGGTCGCGCGGAGCCAG
GCCCCGGTGTACATCGCCGGCGAGTCGGGTGTCGGCAAGGAGCTGGTCGCCCGCACCATCCACGCTGAAGGCAGCCGCGG
CGCGGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCCAATGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCACAGCGCCGACGGCGGCACCCTGTTCCTGGACGAAGTC
GCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGAAACCGGTGGGAGCCAACGC
CGAGGTGATGGTGGATGTACGCATCCTCTCGGCCACGCACAAGGACCTGGCCGGCATGGTCGCCGATGGCCGCTTCCGCC
AGGACCTCTACTACCGCATCAATGTGATCGAGCTGCGCGTGCCGCCGTTGCGCGAGCGTCTGGCCGACCTGCCGGGCCTG
TGCGCGAAGATCGTCCAGCGCCTGGCTGCCGACCTGGGCCGCGAGCCGCCGGCGCTTTCGGCCGAGGCGATGGACGCACT
GGGCCGGTACAGCTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGATGGCAATGGCCGACGGCGATC
AGCTCGAAATGCATGACCTGCACCTGCCGCAGACGGTCACCGCACACGCCCCGGCGCATCAGGCGCCACGCGAACCCGGC
GTTGCACCGTTGCAGCCCCTGGCGCGCGGCGAGCAGACGCCGCAGGCCGCGGCGGCGGCGGCGGGCATCGACCCGCGCAC
CATCGACCCCCGGGACACCGCGACCAGCGCGTTGCCCTCCTACATCGAGGAAATCGAACGCGCCGCCATCCAGCACGCCC
TGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGTCGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAG
AAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(442-482)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6UGS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.42

99.175

0.579
  pilR Acinetobacter baumannii strain A118

46.516

100

0.468