Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IP360_RS08035 Genome accession   NZ_CP063532
Coordinates   1574598..1575401 (+) Length   267 a.a.
NCBI ID   WP_370522328.1    Uniprot ID   -
Organism   Helicobacter winghamensis strain ATCC BAA-434     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1569598..1580401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP360_RS08015 (IP360_07975) minD 1570261..1571061 (+) 801 WP_370522324.1 septum site-determining protein MinD -
  IP360_RS08020 (IP360_07980) minE 1571058..1571291 (+) 234 WP_370522325.1 cell division topological specificity factor MinE -
  IP360_RS08025 (IP360_07985) - 1571298..1572395 (+) 1098 WP_370522326.1 divergent polysaccharide deacetylase family protein -
  IP360_RS08030 (IP360_07990) - 1572472..1574601 (+) 2130 WP_370522327.1 WD40 repeat domain-containing protein -
  IP360_RS08035 (IP360_07995) dprA 1574598..1575401 (+) 804 WP_370522328.1 DNA-processing protein DprA Machinery gene
  IP360_RS08040 (IP360_08000) - 1575406..1576266 (-) 861 WP_370522329.1 hypothetical protein -
  IP360_RS08045 (IP360_08005) - 1576359..1576931 (-) 573 WP_006802984.1 C39 family peptidase -
  IP360_RS08050 (IP360_08010) - 1576931..1578109 (-) 1179 WP_370522330.1 hypothetical protein -
  IP360_RS08055 (IP360_08015) - 1578173..1578685 (-) 513 WP_370522331.1 hypothetical protein -
  IP360_RS08060 (IP360_08020) - 1578796..1579749 (-) 954 WP_370522332.1 hypothetical protein -
  IP360_RS08065 (IP360_08025) - 1579819..1580352 (-) 534 WP_370522333.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29707.34 Da        Isoelectric Point: 7.7590

>NTDB_id=496098 IP360_RS08035 WP_370522328.1 1574598..1575401(+) (dprA) [Helicobacter winghamensis strain ATCC BAA-434]
MILQLEQIPPSLTHIKELETLYYCGNLGLLKAPKVTIIGTRNPNPYAQSFTQTLAQKLSKHGIVIVSGGALGIDIIAHAN
ALPNTIMISPSSLDYIYPKSNAPIISKIYKQGLILSQFTPTYTPHRYSFLERNKIVISLGECVIIPQADLKSGSMQSAQY
ALSLGKTIFVPPHHLGQSLGTQSLAKNNQARVIWDIDAFVNELCASILDSNITPNLRASLRDSKDEILEFCQSNPFFEEA
FLRFGEMLFEYELEGKIRRNNGRIEVV

Nucleotide


Download         Length: 804 bp        

>NTDB_id=496098 IP360_RS08035 WP_370522328.1 1574598..1575401(+) (dprA) [Helicobacter winghamensis strain ATCC BAA-434]
ATGATTTTACAACTTGAGCAAATCCCTCCATCACTCACACATATTAAAGAGCTTGAAACACTCTATTACTGCGGTAATTT
AGGGCTTTTAAAAGCACCTAAAGTTACAATCATTGGCACGCGCAATCCAAATCCTTATGCTCAAAGCTTCACCCAAACTC
TAGCGCAAAAACTCAGCAAACACGGAATTGTAATTGTAAGTGGTGGCGCATTAGGCATTGATATTATCGCTCATGCAAAC
GCCCTGCCAAATACCATTATGATTTCCCCAAGCTCATTAGATTACATTTATCCCAAAAGCAACGCGCCTATTATTTCTAA
AATCTACAAACAAGGCTTGATTCTTAGTCAATTTACCCCCACTTACACCCCACACCGCTATTCTTTTTTAGAGCGTAATA
AAATTGTAATAAGTCTTGGTGAATGCGTGATTATCCCCCAAGCGGATTTAAAAAGTGGCTCTATGCAAAGCGCACAATAT
GCCCTAAGCCTTGGCAAAACGATTTTTGTCCCGCCTCACCATTTAGGACAGAGTCTTGGCACGCAAAGTTTAGCCAAAAA
CAATCAAGCGCGGGTGATTTGGGATATAGATGCTTTTGTAAATGAGCTTTGCGCAAGCATTTTGGATTCCAACATTACGC
CAAATTTAAGGGCGAGTTTAAGGGATTCCAAAGATGAAATTTTAGAATTTTGCCAAAGCAATCCCTTTTTTGAGGAAGCC
TTTTTACGCTTTGGCGAAATGTTATTTGAATACGAATTAGAAGGCAAAATCCGTCGAAACAATGGACGCATAGAAGTTGT
GTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

49.807

97.004

0.483
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44.492

88.39

0.393