Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SSGZ1_RS07905 Genome accession   NC_017617
Coordinates   1585171..1585860 (-) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis GZ1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580171..1590860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSGZ1_RS07880 (SSGZ1_1555) - 1580641..1581354 (-) 714 WP_014636108.1 NADPH-dependent oxidoreductase -
  SSGZ1_RS07885 (SSGZ1_1556) dnaI 1581351..1582250 (-) 900 WP_014636109.1 primosomal protein DnaI -
  SSGZ1_RS07890 (SSGZ1_1557) - 1582250..1583401 (-) 1152 WP_014636110.1 helicase DnaB -
  SSGZ1_RS07895 nrdR 1583388..1583879 (-) 492 Protein_1510 transcriptional regulator NrdR -
  SSGZ1_RS07900 (SSGZ1_1560) - 1583951..1585081 (-) 1131 WP_014636113.1 AI-2E family transporter -
  SSGZ1_RS07905 (SSGZ1_1561) covR 1585171..1585860 (-) 690 WP_012027645.1 DNA-binding response regulator Regulator
  SSGZ1_RS07910 (SSGZ1_1562) gndA 1585942..1587369 (-) 1428 WP_012028448.1 NADP-dependent phosphogluconate dehydrogenase -
  SSGZ1_RS07915 (SSGZ1_1563) - 1587466..1588005 (-) 540 WP_012027649.1 YceD family protein -
  SSGZ1_RS07920 (SSGZ1_1564) trxB 1588015..1588932 (-) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  SSGZ1_RS07925 (SSGZ1_1565) - 1588946..1589170 (-) 225 WP_002936682.1 DUF4059 family protein -
  SSGZ1_RS07930 (SSGZ1_1566) - 1589188..1590531 (-) 1344 WP_012027650.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=49597 SSGZ1_RS07905 WP_012027645.1 1585171..1585860(-) (covR) [Streptococcus suis GZ1]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=49597 SSGZ1_RS07905 WP_012027645.1 1585171..1585860(-) (covR) [Streptococcus suis GZ1]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAAAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
TAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGACTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGCTGGCAACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432

Multiple sequence alignment