Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IP586_RS29675 Genome accession   NZ_CP063455
Coordinates   6526258..6526662 (-) Length   134 a.a.
NCBI ID   WP_025131048.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PC-578039     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6521258..6531662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP586_RS29660 - 6523081..6525144 (-) 2064 WP_110652425.1 methyl-accepting chemotaxis protein -
  IP586_RS29665 - 6525285..6525824 (-) 540 WP_102881161.1 chemotaxis protein CheW -
  IP586_RS29670 pilH 6525835..6526200 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  IP586_RS29675 pilG 6526258..6526662 (-) 405 WP_025131048.1 twitching motility response regulator PilG Regulator
  IP586_RS29680 gshB 6526899..6527870 (+) 972 WP_267269057.1 glutathione synthase -
  IP586_RS29685 - 6528001..6528900 (+) 900 WP_102881163.1 energy transducer TonB -
  IP586_RS29690 - 6529030..6529599 (+) 570 WP_102862072.1 YqgE/AlgH family protein -
  IP586_RS29695 ruvX 6529599..6530036 (+) 438 WP_267269058.1 Holliday junction resolvase RuvX -
  IP586_RS29700 pyrR 6530153..6530659 (+) 507 WP_060841533.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14766.31 Da        Isoelectric Point: 7.3848

>NTDB_id=495725 IP586_RS29675 WP_025131048.1 6526258..6526662(-) (pilG) [Pseudomonas protegens strain PC-578039]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=495725 IP586_RS29675 WP_025131048.1 6526258..6526662(-) (pilG) [Pseudomonas protegens strain PC-578039]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGCTGTGAAGTCATTACCGCAGTGGACGGCTTCGAAGCGCTGTCGAAGATCGTCGACCACCACCCCGGAA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGTGCGCTGGTGAAGAACCACAGCGCGTTCAAG
TCCATTCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

43.59

87.313

0.381