Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IP586_RS27160 Genome accession   NZ_CP063455
Coordinates   5977852..5979180 (+) Length   442 a.a.
NCBI ID   WP_253085112.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PC-578039     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5972852..5984180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP586_RS27140 pgeF 5974486..5975211 (-) 726 WP_267268938.1 peptidoglycan editing factor PgeF -
  IP586_RS27145 rluD 5975208..5976170 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IP586_RS27150 - 5976321..5977343 (+) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  IP586_RS27155 - 5977468..5977701 (+) 234 WP_253085051.1 PP0621 family protein -
  IP586_RS27160 pilR 5977852..5979180 (+) 1329 WP_253085112.1 sigma-54-dependent transcriptional regulator Regulator
  IP586_RS27165 thiO 5979177..5980277 (-) 1101 WP_110652086.1 glycine oxidase ThiO -
  IP586_RS27170 - 5980334..5980735 (-) 402 WP_102882252.1 type IV pilin protein -
  IP586_RS27175 - 5980751..5981257 (-) 507 WP_267268939.1 hypothetical protein -
  IP586_RS27180 - 5981244..5981684 (-) 441 WP_110652084.1 pilus assembly PilX family protein -
  IP586_RS27185 - 5981726..5982436 (-) 711 WP_267268940.1 PilW family protein -
  IP586_RS27190 pilV 5982445..5982876 (-) 432 WP_267268941.1 type IV pilus modification protein PilV -
  IP586_RS27195 - 5983266..5983790 (+) 525 WP_102865453.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49680.38 Da        Isoelectric Point: 8.0115

>NTDB_id=495721 IP586_RS27160 WP_253085112.1 5977852..5979180(+) (pilR) [Pseudomonas protegens strain PC-578039]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQASALEVGACDLLHKPLHPMRLREWISSRLKRLPTTTKNLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDVPSPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTVAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=495721 IP586_RS27160 WP_253085112.1 5977852..5979180(+) (pilR) [Pseudomonas protegens strain PC-578039]
ATGAACCCAATGCCCAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCTCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCACCACAAAAAACCTACCCGACCATCAGTTGT
TGGGACATTCACCACCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAACGAGTGGCGCGTTTGATCCACCAGTTGGGTCCAAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGTGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TTGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTAGCC
ATGCAGGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGCCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGTGAGGTAGAGTCCGGCCGCTTTCGCCAAGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGTCCAGGAGATATCGAGATACTGGCGCGGCATATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTGAGCCCGCAAGCTCTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATCGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACGTCCCCTCCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACGGTGGCGGCCCGACGGCTGAGCCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

44.156

100

0.462