Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IP586_RS09925 Genome accession   NZ_CP063455
Coordinates   2133309..2133944 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PC-578039     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128309..2138944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP586_RS09905 - 2128558..2129490 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  IP586_RS09910 - 2129487..2130266 (+) 780 WP_102863930.1 ABC transporter permease -
  IP586_RS09915 - 2130320..2130835 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  IP586_RS09920 comA 2130975..2133206 (+) 2232 WP_267269614.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IP586_RS09925 exbB 2133309..2133944 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IP586_RS09930 - 2133941..2134369 (+) 429 WP_102863926.1 ExbD/TolR family protein -
  IP586_RS09935 lpxK 2134369..2135379 (+) 1011 WP_102878921.1 tetraacyldisaccharide 4'-kinase -
  IP586_RS09940 - 2135403..2135588 (+) 186 WP_011060103.1 Trm112 family protein -
  IP586_RS09945 kdsB 2135585..2136349 (+) 765 WP_253084468.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IP586_RS09950 - 2136349..2136813 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  IP586_RS09955 murB 2136810..2137829 (+) 1020 WP_267269615.1 UDP-N-acetylmuramate dehydrogenase -
  IP586_RS09960 - 2138081..2138551 (+) 471 WP_102878924.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=495712 IP586_RS09925 WP_162884118.1 2133309..2133944(+) (exbB) [Pseudomonas protegens strain PC-578039]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=495712 IP586_RS09925 WP_162884118.1 2133309..2133944(+) (exbB) [Pseudomonas protegens strain PC-578039]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGATCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGCATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877