Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IP586_RS09920 Genome accession   NZ_CP063455
Coordinates   2130975..2133206 (+) Length   743 a.a.
NCBI ID   WP_267269614.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PC-578039     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2125975..2138206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP586_RS09895 - 2127100..2127759 (+) 660 WP_267269612.1 transglutaminase-like domain-containing protein -
  IP586_RS09900 - 2127802..2128425 (+) 624 WP_267269613.1 glutathione S-transferase family protein -
  IP586_RS09905 - 2128558..2129490 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  IP586_RS09910 - 2129487..2130266 (+) 780 WP_102863930.1 ABC transporter permease -
  IP586_RS09915 - 2130320..2130835 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  IP586_RS09920 comA 2130975..2133206 (+) 2232 WP_267269614.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IP586_RS09925 exbB 2133309..2133944 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IP586_RS09930 - 2133941..2134369 (+) 429 WP_102863926.1 ExbD/TolR family protein -
  IP586_RS09935 lpxK 2134369..2135379 (+) 1011 WP_102878921.1 tetraacyldisaccharide 4'-kinase -
  IP586_RS09940 - 2135403..2135588 (+) 186 WP_011060103.1 Trm112 family protein -
  IP586_RS09945 kdsB 2135585..2136349 (+) 765 WP_253084468.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IP586_RS09950 - 2136349..2136813 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  IP586_RS09955 murB 2136810..2137829 (+) 1020 WP_267269615.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81319.71 Da        Isoelectric Point: 10.4355

>NTDB_id=495711 IP586_RS09920 WP_267269614.1 2130975..2133206(+) (comA) [Pseudomonas protegens strain PC-578039]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGAGVVRFELKDAQSRRERLPQRIRLAWHGGPPVNSGERWRLAVKLRRPAGLFNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRVLAVEAHGRAAGLAALVMGDGSGLTREEWQLLQDTGTVHLMVISGQHISLLAALIYLA
VAALARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLGAWWPLLLALNAVLLIEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWTGAADGNQASCVLLVEAGGERLLLSGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRQLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=495711 IP586_RS09920 WP_267269614.1 2130975..2133206(+) (comA) [Pseudomonas protegens strain PC-578039]
ATGGTTACAGGGATGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCAGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCTGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGTTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGACGGTCTGCGCCAGCGTGTACTCGCGGTCGA
GGCCCATGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGAATGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGTCTGCTGGCCGCATTGATCTACCTTGCC
GTGGCAGCGCTGGCTCGTTACGGGCTTTGGCCTGCGCGCTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCATCTCGGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGATCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGCCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGCTGTTGCTGTTGGCCGTC
TGGCCTCCCCAGGACCCGGTACCCGAGGGCGAGGTGGAGATCTGGCAGTTGGATGTGGGGCAGGGGTTGTCGTTCATTCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCCGAGGCTTTGCCGGCTGCCCTGCAGTCGGC
CCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGACGGGGGCGGCAGACGGCA
ATCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCAGCGGCGATATCGATGTCCATGCTGAG
CGGGCTTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.501

0.616