Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IP585_RS07985 Genome accession   NZ_CP063454
Coordinates   1763786..1766002 (+) Length   738 a.a.
NCBI ID   WP_267273732.1    Uniprot ID   -
Organism   Pseudomonas putida strain PC-578038     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758786..1771002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IP585_RS07965 - 1760662..1761285 (+) 624 WP_014591940.1 glutathione S-transferase -
  IP585_RS07970 - 1761419..1762351 (+) 933 WP_010952922.1 ABC transporter ATP-binding protein -
  IP585_RS07975 - 1762348..1763127 (+) 780 WP_003247128.1 ABC transporter permease -
  IP585_RS07980 - 1763137..1763643 (-) 507 Protein_1568 DUF2062 domain-containing protein -
  IP585_RS07985 comA 1763786..1766002 (+) 2217 WP_267273732.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IP585_RS07990 exbB 1766154..1766789 (+) 636 WP_026031862.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IP585_RS07995 - 1766786..1767220 (+) 435 WP_014591937.1 ExbD/TolR family protein -
  IP585_RS08000 lpxK 1767220..1768221 (+) 1002 WP_014591936.1 tetraacyldisaccharide 4'-kinase -
  IP585_RS08005 - 1768266..1768451 (+) 186 WP_003247142.1 Trm112 family protein -
  IP585_RS08010 kdsB 1768448..1769212 (+) 765 WP_267273733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IP585_RS08015 - 1769212..1769676 (+) 465 WP_014591934.1 low molecular weight protein-tyrosine-phosphatase -
  IP585_RS08020 murB 1769673..1770692 (+) 1020 WP_019437412.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79648.54 Da        Isoelectric Point: 10.4801

>NTDB_id=495693 IP585_RS07985 WP_267273732.1 1763786..1766002(+) (comA) [Pseudomonas putida strain PC-578038]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLRWFDGPPLRAGEQWRLAVTLQRPDGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGVFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPLWAWLLVCLGALLILLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVFLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHSGGAG
AIQRGLPIKRIIGGEALVDVPLQPCVSGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDIEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=495693 IP585_RS07985 WP_267273732.1 1763786..1766002(+) (comA) [Pseudomonas putida strain PC-578038]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCTGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCACTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAAGGG
CGGGTGGCGGGTTTGCCGGCCCGCACAGCACAAGGCGTGCGTTTCGAACTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGCTTGCAACTGCGCTGGTTCGACGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGACGGGCTGCTGAACCCGCATGGGCCCGACCGTGAAGCGCAGTTGCTGGCGCGACGGGTGGGCGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCCCTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCTGGCGGTGGGGTGCCAGTGCAGCGGGCCTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGTTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
CTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTTGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGATTTTGCTGCCCCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTGCCCAGGGAGCCGGTGCCGTTTGGCCAGGTCGAGGTCTGGCAGCTGGATGTTGGCCAGGGGCTGGCGGTGTTTTTGCG
TACGCGGCATCACAGCCTCCTCTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATTCGGGCGGGGCCGGA
GCCATCCAGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGTCAG
TGGCGAGCAATGGGATTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTCTTGTTGGTCGAAGCGCAGGGTGAGCGCTTGCTGCTGGCAGGGGATATCGAGGCTGCTGCCGAAAGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCATCCGCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGAGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTTGGTGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.807

97.696

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.566

100

0.367