Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IM701_RS12955 Genome accession   NZ_CP063445
Coordinates   2669185..2669739 (-) Length   184 a.a.
NCBI ID   WP_062346652.1    Uniprot ID   A0A7M2X800
Organism   Novosphingobium sp. ES2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2664185..2674739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM701_RS12940 (IM701_12940) - 2664370..2665488 (-) 1119 WP_039331666.1 ABC transporter permease -
  IM701_RS12945 (IM701_12945) - 2665617..2668319 (+) 2703 WP_193827160.1 valine--tRNA ligase -
  IM701_RS12950 (IM701_12950) - 2668322..2669065 (+) 744 WP_193828446.1 7-carboxy-7-deazaguanine synthase QueE -
  IM701_RS12955 (IM701_12955) ssb 2669185..2669739 (-) 555 WP_062346652.1 single-stranded DNA-binding protein Machinery gene
  IM701_RS12960 (IM701_12960) - 2669837..2671696 (-) 1860 WP_193827161.1 ferrous iron transporter B -
  IM701_RS12965 (IM701_12965) - 2671693..2671947 (-) 255 WP_039331659.1 FeoA family protein -
  IM701_RS12970 (IM701_12970) - 2672018..2672668 (-) 651 WP_193827162.1 COQ9 family protein -
  IM701_RS12975 (IM701_12975) - 2672680..2673294 (-) 615 WP_082013254.1 ankyrin repeat domain-containing protein -
  IM701_RS12980 (IM701_12980) - 2673374..2673985 (+) 612 WP_193827163.1 SCO family protein -
  IM701_RS12985 (IM701_12985) - 2673993..2674436 (+) 444 WP_193827164.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18447.08 Da        Isoelectric Point: 5.9290

>NTDB_id=495670 IM701_RS12955 WP_062346652.1 2669185..2669739(-) (ssb) [Novosphingobium sp. ES2-1]
MAGSVNKVILVGNLGADPEIKSFQNGGRIANLRIATSESWKDRATGEKKERTEWHSVVINSDGLVGVVERFLRKGSKVYI
EGQLRTRKWQDQSGNDRYTTEISVGGMGGVLTMLDGSGGAGGGGMGGGGGGRSSGGGWNEGGSSGGSGGFGGGSSRGGSA
ASGGGWNQGGGGGFGDDLDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=495670 IM701_RS12955 WP_062346652.1 2669185..2669739(-) (ssb) [Novosphingobium sp. ES2-1]
ATGGCAGGCAGCGTCAACAAGGTGATCCTTGTCGGGAACCTCGGGGCAGACCCCGAAATCAAGAGCTTCCAGAACGGAGG
CCGCATCGCCAACCTGCGCATCGCGACGTCCGAAAGCTGGAAGGACCGCGCCACCGGCGAGAAGAAGGAGCGCACCGAGT
GGCACTCCGTGGTCATCAACTCGGATGGTCTCGTCGGCGTGGTCGAGCGCTTCCTGCGCAAGGGTTCAAAGGTCTACATT
GAAGGGCAGCTGCGCACCCGCAAGTGGCAGGACCAGTCCGGCAATGATCGCTATACCACCGAAATCTCGGTGGGCGGCAT
GGGCGGCGTGCTGACCATGCTCGATGGCTCGGGCGGCGCTGGTGGCGGTGGCATGGGCGGTGGCGGCGGTGGCCGCTCGT
CCGGTGGCGGCTGGAATGAGGGCGGCTCGTCGGGCGGTTCGGGCGGCTTTGGCGGCGGTTCCTCGCGTGGTGGCAGCGCC
GCTTCGGGCGGTGGCTGGAACCAGGGCGGCGGCGGCGGCTTCGGCGACGATCTGGACGACGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M2X800

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.489
  ssb Vibrio cholerae strain A1552

46.667

97.826

0.457