Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SPYALAB49_RS06080 Genome accession   NC_017596
Coordinates   1199324..1200361 (-) Length   345 a.a.
NCBI ID   WP_011284961.1    Uniprot ID   -
Organism   Streptococcus pyogenes Alab49     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1194324..1205361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYALAB49_RS06055 (SPYALAB49_001241) - 1194328..1194855 (-) 528 WP_014635585.1 Dps family protein -
  SPYALAB49_RS06060 (SPYALAB49_001242) - 1195083..1195709 (+) 627 WP_002989076.1 A24 family peptidase -
  SPYALAB49_RS06065 (SPYALAB49_001243) rlmN 1195791..1196870 (-) 1080 WP_002992788.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SPYALAB49_RS06070 (SPYALAB49_001244) - 1196874..1197494 (-) 621 WP_002992791.1 YutD family protein -
  SPYALAB49_RS06075 (SPYALAB49_001246) - 1197942..1198919 (-) 978 WP_002994809.1 LacI family DNA-binding transcriptional regulator -
  SPYALAB49_RS06080 (SPYALAB49_001247) sepM 1199324..1200361 (-) 1038 WP_011284961.1 SepM family pheromone-processing serine protease Regulator
  SPYALAB49_RS06085 (SPYALAB49_001248) coaD 1200348..1200839 (-) 492 WP_002983821.1 pantetheine-phosphate adenylyltransferase -
  SPYALAB49_RS06090 (SPYALAB49_001249) rsmD 1200829..1201368 (-) 540 WP_002983819.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SPYALAB49_RS06095 (SPYALAB49_001250) asnA 1201491..1202483 (-) 993 WP_002983817.1 aspartate--ammonia ligase -
  SPYALAB49_RS06100 (SPYALAB49_001251) arcC 1202796..1203746 (-) 951 WP_010922501.1 carbamate kinase -
  SPYALAB49_RS06105 (SPYALAB49_001252) - 1203766..1205097 (-) 1332 WP_011285641.1 dipeptidase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37571.27 Da        Isoelectric Point: 9.6692

>NTDB_id=49542 SPYALAB49_RS06080 WP_011284961.1 1199324..1200361(-) (sepM) [Streptococcus pyogenes Alab49]
MKRLKKIKWWLVGLLALISLLLALFFPLPYYIEMPGGAYDIRTVLQVNGKEDKRKGAYQFVAVGISRASLAQLLYAWLTP
FTEISTAEDTTGGYSDTDFLRINQFYMETSQNAAIYQALSLAGKPVTLDYKGVYVLDVNNESTFKGTLHLADTVTGVNGK
QFTSSAELIDYVSHLKLGDEVTVQFTSDNKPKKGVGRIIKLKNGKNGIGIALTDHTSVNSEDTVIFSTKGVGGPSAGLMF
TLDIYDQITKEDLRKGRTIAGTGTIGKDGEVGDIGGAGLKVVAAAEAGADIFFVPNNPVDKEIKKVNPNAISNYEEAKRA
AKRLKTKMKIVPVTTVQEALVYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=49542 SPYALAB49_RS06080 WP_011284961.1 1199324..1200361(-) (sepM) [Streptococcus pyogenes Alab49]
ATGAAAAGACTTAAAAAAATCAAATGGTGGTTAGTGGGTCTGCTAGCTTTAATCTCTTTGTTGCTAGCGTTATTTTTTCC
GCTACCTTATTATATTGAAATGCCTGGAGGCGCTTACGATATTCGGACTGTCTTACAAGTCAATGGCAAAGAAGACAAAC
GAAAAGGAGCTTACCAGTTTGTTGCAGTGGGCATTAGTCGTGCCAGCCTCGCGCAGCTATTATATGCTTGGCTGACACCG
TTTACTGAAATTAGTACAGCAGAAGATACAACAGGCGGATACAGCGATACTGATTTCCTTCGAATTAATCAATTTTACAT
GGAAACATCACAAAATGCAGCTATTTATCAAGCTTTATCCTTAGCTGGAAAACCAGTTACATTAGATTATAAAGGCGTAT
ATGTTTTAGACGTAAACAACGAATCTACTTTTAAAGGAACGTTACACTTAGCAGATACTGTAACAGGTGTAAATGGTAAA
CAGTTTACTAGTTCAGCAGAACTTATTGACTATGTTTCTCACCTAAAACTAGGGGATGAAGTTACGGTTCAGTTTACGAG
TGATAATAAGCCTAAAAAAGGAGTTGGCCGTATTATCAAACTGAAAAATGGGAAAAATGGGATTGGCATTGCCTTGACTG
ATCATACAAGTGTCAATTCAGAAGACACAGTGATCTTTAGTACTAAAGGAGTAGGAGGACCTAGTGCTGGTCTAATGTTT
ACTCTTGATATATATGATCAAATAACTAAAGAAGATTTACGCAAGGGCCGTACAATTGCAGGTACAGGAACTATTGGCAA
GGATGGCGAAGTAGGAGATATTGGTGGTGCAGGTCTTAAAGTAGTTGCAGCAGCTGAAGCTGGTGCAGATATATTTTTTG
TTCCGAATAATCCTGTTGATAAGGAAATTAAAAAAGTTAATCCAAATGCTATAAGTAATTACGAAGAAGCCAAACGGGCA
GCCAAACGACTAAAGACCAAAATGAAGATTGTTCCTGTTACGACTGTTCAAGAGGCACTGGTTTATCTTCGCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.986

100

0.69


Multiple sequence alignment