Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KIM13_RS20975 Genome accession   NZ_CP074898
Coordinates   4137782..4138519 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2009C_3612     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4132782..4143519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM13_RS20960 (KIM13_20690) clpC 4133236..4135809 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KIM13_RS20965 (KIM13_20695) yfiH 4135939..4136670 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KIM13_RS20970 (KIM13_20700) rluD 4136667..4137647 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KIM13_RS20975 (KIM13_20705) comL 4137782..4138519 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KIM13_RS20980 (KIM13_20710) raiA 4138790..4139131 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KIM13_RS20985 (KIM13_20715) pheL 4139235..4139282 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KIM13_RS20990 (KIM13_20720) pheA 4139381..4140541 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KIM13_RS20995 (KIM13_20725) tyrA 4140584..4141705 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KIM13_RS21000 (KIM13_20730) aroF 4141716..4142786 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KIM13_RS21005 (KIM13_20735) yfiL 4142996..4143361 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=494902 KIM13_RS20975 WP_000197686.1 4137782..4138519(+) (comL) [Escherichia coli strain 2009C_3612]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=494902 KIM13_RS20975 WP_000197686.1 4137782..4138519(+) (comL) [Escherichia coli strain 2009C_3612]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376