Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EKR40_RS07510 Genome accession   NZ_CP063381
Coordinates   1471655..1472899 (+) Length   414 a.a.
NCBI ID   WP_012951603.1    Uniprot ID   -
Organism   Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1466655..1477899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKR40_RS07490 (EKR40_07490) - 1467829..1469115 (+) 1287 WP_003732282.1 pitrilysin family protein -
  EKR40_RS07495 (EKR40_07495) - 1469207..1469938 (+) 732 WP_012951602.1 SDR family oxidoreductase -
  EKR40_RS07500 (EKR40_07500) - 1469989..1470918 (+) 930 WP_003732284.1 RodZ family helix-turn-helix domain-containing protein -
  EKR40_RS07505 (EKR40_07505) pgsA 1471008..1471586 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EKR40_RS07510 (EKR40_07510) cinA 1471655..1472899 (+) 1245 WP_012951603.1 competence/damage-inducible protein A Machinery gene
  EKR40_RS07515 (EKR40_07515) recA 1473172..1474218 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  EKR40_RS07520 (EKR40_07520) rny 1474519..1476081 (+) 1563 WP_003721904.1 ribonuclease Y -
  EKR40_RS07525 (EKR40_07525) - 1476195..1476692 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  EKR40_RS07530 (EKR40_07530) - 1476698..1477501 (+) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  EKR40_RS07535 (EKR40_07535) - 1477518..1477880 (+) 363 WP_012951604.1 YlbF family regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45632.82 Da        Isoelectric Point: 4.8669

>NTDB_id=494902 EKR40_RS07510 WP_012951603.1 1471655..1472899(+) (cinA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRSMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=494902 EKR40_RS07510 WP_012951603.1 1471655..1472899(+) (cinA) [Listeria monocytogenes strain clinical isolate of L. monocytogenes isolate 12-05460]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAAGCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

50.367

98.792

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386