Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | IPU21_RS06740 | Genome accession | NZ_CP063368 |
| Coordinates | 1413795..1414769 (+) | Length | 324 a.a. |
| NCBI ID | WP_096541457.1 | Uniprot ID | A0AAP8DTL3 |
| Organism | Staphylococcus delphini strain 245-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1408795..1419769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPU21_RS06705 (IPU21_06725) | rpmG | 1409185..1409349 (+) | 165 | WP_256726578.1 | 50S ribosomal protein L33 | - |
| IPU21_RS06710 (IPU21_06730) | - | 1409499..1410038 (+) | 540 | WP_096541475.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| IPU21_RS06715 (IPU21_06735) | - | 1410057..1411496 (+) | 1440 | WP_212574399.1 | rhomboid family intramembrane serine protease | - |
| IPU21_RS06720 (IPU21_06740) | - | 1411498..1411701 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| IPU21_RS06725 (IPU21_06745) | - | 1411698..1412684 (+) | 987 | WP_019165227.1 | ROK family glucokinase | - |
| IPU21_RS06730 (IPU21_06750) | - | 1412685..1412996 (+) | 312 | WP_096541463.1 | MTH1187 family thiamine-binding protein | - |
| IPU21_RS06735 (IPU21_06755) | - | 1413009..1413638 (+) | 630 | WP_096541460.1 | MBL fold metallo-hydrolase | - |
| IPU21_RS06740 (IPU21_06760) | comGA | 1413795..1414769 (+) | 975 | WP_096541457.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| IPU21_RS06745 (IPU21_06765) | comGB | 1414738..1415805 (+) | 1068 | WP_212574400.1 | competence type IV pilus assembly protein ComGB | - |
| IPU21_RS06750 (IPU21_06770) | comGC | 1415818..1416141 (+) | 324 | WP_212574401.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| IPU21_RS06755 (IPU21_06775) | comGD | 1416119..1416559 (+) | 441 | WP_212574402.1 | competence type IV pilus minor pilin ComGD | - |
| IPU21_RS06760 (IPU21_06780) | - | 1416664..1416864 (+) | 201 | WP_241520259.1 | hypothetical protein | - |
| IPU21_RS06765 (IPU21_06785) | - | 1416770..1417255 (+) | 486 | WP_142302713.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| IPU21_RS06770 (IPU21_06790) | - | 1417419..1417946 (+) | 528 | WP_212574403.1 | shikimate kinase | - |
| IPU21_RS06775 (IPU21_06795) | gcvT | 1418104..1419195 (+) | 1092 | WP_096605370.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36896.63 Da Isoelectric Point: 7.2459
>NTDB_id=494806 IPU21_RS06740 WP_096541457.1 1413795..1414769(+) (comGA) [Staphylococcus delphini strain 245-1]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKKDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKKDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=494806 IPU21_RS06740 WP_096541457.1 1413795..1414769(+) (comGA) [Staphylococcus delphini strain 245-1]
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTAGATATTTCGACACGCCACAAAGCACAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACATTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGTACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACGATAGAAGACCCCGTGGAGCAGCTTGTCAACGGTATTACACAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGGTCATCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGCCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGACATTTAGTATTGTCGACGATACACGCCAACGATTGTCAAGGGGTGCTCCTG
AGACTGATTGAAATGGGACTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAAAGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAAGGGGTTATAGATGAAAAGATTTTACGA
AAATATACGATTTAA
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTAGATATTTCGACACGCCACAAAGCACAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACATTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGTACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACGATAGAAGACCCCGTGGAGCAGCTTGTCAACGGTATTACACAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGGTCATCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGCCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGACATTTAGTATTGTCGACGATACACGCCAACGATTGTCAAGGGGTGCTCCTG
AGACTGATTGAAATGGGACTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAAAGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAAGGGGTTATAGATGAAAAGATTTTACGA
AAATATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
59.133 |
99.691 |
0.59 |
| comGA | Staphylococcus aureus N315 |
59.133 |
99.691 |
0.59 |